View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13569_high_8 (Length: 463)

Name: NF13569_high_8
Description: NF13569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13569_high_8
NF13569_high_8
[»] chr3 (2 HSPs)
chr3 (13-463)||(7760650-7761100)
chr3 (43-90)||(7815791-7815838)


Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Complemental strand, 7761100 - 7760650
Alignment:
Q  13 tatactctgaagaatttagcttatttgacattgtgcattgtgatttaatttcttgtgacgtgaataaccattcttcccgccctaactcttgttcgataga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7761100 tatactctgaagaatttagcttatttgacattgtgcattgtgatttaatttcttgtgacgtgaataaccattcttcccgccctaactcttgttcgataga 7761001  T
Q  113 gttcgacagctctaactaatagttttgtgggttttcagcttcaaccaactgtaac-aaatcattgcagagatggagttgtacttgttctgataacttggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7761000 gttcgacagctctaactaatagttttgtgggttttcagcttcaaccaactgtaaccaaatcattgcagagatggagttgtacttgttgtgataacttggt 7760901  T
Q  212 tttctcacctcggacaacgacaaatcttcctttgctgaaagaatttaagctgtaatgcttcattatcagcgctacatgagtccccaagttgcttctactg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  7760900 tttctcacctcggacaacgacaaatcttcctttgctgaaagaatttaagctgtaatgcttcattatcagcgctacatgagtccc-aagtggcttctactg 7760802  T
Q  312 ctagtattaagtctgccccaagtaggattaaatcatgtccttgcactaaagcttccagattctgaatgagtctctcagtatttaatgtttggccatttac 411  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7760801 ctagtattaagtctgccccaagtagggttaaatcatgtccttgcactaaagcttccagattctgaatgagtctctcagtatttaatgtttggccatttac 7760702  T
Q  412 taataatacattgaacacatgagtgcaaacgttgatcatccggcctttagaa 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7760701 taataatacattgaacacatgagtgcaaacgttgatcatccggcctttagaa 7760650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 7815838 - 7815791
Alignment:
Q  43 ttgtgcattgtgatttaatttcttgtgacgtgaataaccattcttccc 90  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  7815838 ttgtgcattgtgatttaatttcttgtcgcgtgaataagcattcttccc 7815791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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