View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13569_high_9 (Length: 429)
Name: NF13569_high_9
Description: NF13569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13569_high_9 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 18143967 - 18144354
Alignment:
| Q |
14 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18143967 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
18144066 |
T |
|
| Q |
114 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144067 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
18144166 |
T |
|
| Q |
214 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144167 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
18144266 |
T |
|
| Q |
314 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattgccctgccctct |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144267 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattgccctgccctct |
18144354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 48185283 - 48185628
Alignment:
| Q |
14 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48185283 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccg |
48185382 |
T |
|
| Q |
114 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
48185383 |
cagaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcgga |
48185482 |
T |
|
| Q |
214 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185483 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagacgtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
48185582 |
T |
|
| Q |
314 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185583 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgt |
48185628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
168 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
259 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 48189553 - 48189599
Alignment:
| Q |
355 |
aatgtgttgatgtaacataatagaacattcatattgccctgccctct |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48189553 |
aatgtgttgatgtaacataatagaacattcatattgccctgccctct |
48189599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 9293777 - 9294013
Alignment:
| Q |
14 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293777 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
9293876 |
T |
|
| Q |
114 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293877 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
9293976 |
T |
|
| Q |
214 |
tttctaacaactagaatggttgaaattaataagatag |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293977 |
tttctaacaactagaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 268 - 429
Target Start/End: Original strand, 9292295 - 9292456
Alignment:
| Q |
268 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9292295 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacaacagatatatcatagattaatgtgttgatgt |
9292394 |
T |
|
| Q |
368 |
aacataatagaacattcatattgccctgccctctnnnnnnnntatatatataacttgaaagg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9292395 |
aacataatagaacattcatattgccctgccctctaaaaaatatatatatataacttgaaagg |
9292456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 24489234 - 24489470
Alignment:
| Q |
14 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489234 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
24489333 |
T |
|
| Q |
114 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489334 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
24489433 |
T |
|
| Q |
214 |
tttctaacaactagaatggttgaaattaataagatag |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489434 |
tttctaacaactagaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 231420 - 231087
Alignment:
| Q |
14 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
113 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
231420 |
attccccatggggtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaaccca |
231321 |
T |
|
| Q |
114 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| ||| || || || ||||| ||| |
|
|
| T |
231320 |
gggaccatattcttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctgcccgtcggtcgggatggtttgtgga |
231221 |
T |
|
| Q |
214 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
313 |
Q |
| |
|
|| | |||| ||| | |||| || ||||||| |||||| |||||||| || || ||||| || ||||| | ||||||| | ||||||||||||| |
|
|
| T |
231220 |
ttccgaacagctatgacaactgaacctagcaagatagtaattacgacccaagaagtgatgagtacctgggcatgaatttgaaaacctcctatttgccaat |
231121 |
T |
|
| Q |
314 |
agaaatgttgacctacttcgacagcagatatatc |
347 |
Q |
| |
|
|||| ||||| |||||||| ||| | |||||||| |
|
|
| T |
231120 |
agaagtgttggcctacttctacacccgatatatc |
231087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 352
Target Start/End: Original strand, 34676485 - 34676652
Alignment:
| Q |
184 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgag |
283 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataagcacttgag |
34676583 |
T |
|
| Q |
284 |
catgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcataga |
352 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
34676584 |
tatgcacttaaaactcacctatttgccaatgaaaatgtttccctacttccacaacagatatatcataga |
34676652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 22966007 - 22965856
Alignment:
| Q |
26 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
125 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||| |
|
|
| T |
22966007 |
gtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattc |
22965909 |
T |
|
| Q |
126 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
178 |
Q |
| |
|
||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965908 |
ttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 25372 - 25503
Alignment:
| Q |
14 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25372 |
attctccatgaggtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaata |
25471 |
T |
|
| Q |
103 |
aacggaacccacggaccatattcttctccaat |
134 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
25472 |
aacggaacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 8868187 - 8868319
Alignment:
| Q |
9 |
agattattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacgga |
108 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||| |
|
|
| T |
8868187 |
agataattctccatgagataactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatgga |
8868284 |
T |
|
| Q |
109 |
acccacggaccatattcttctccaatctgagtttt |
143 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8868285 |
acccactgaccatattcttctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
103 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
150 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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