View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13569_low_1 (Length: 388)

Name: NF13569_low_1
Description: NF13569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13569_low_1
NF13569_low_1
[»] chr3 (8 HSPs)
chr3 (8-369)||(53984800-53985161)
chr3 (8-332)||(53971095-53971418)
chr3 (270-310)||(53059802-53059842)
chr3 (270-309)||(37419108-37419147)
chr3 (168-238)||(53059871-53059941)
chr3 (168-238)||(53062884-53062954)
chr3 (178-238)||(37419176-37419236)
chr3 (168-224)||(53071908-53071964)
[»] chr2 (1 HSPs)
chr2 (168-238)||(6688087-6688157)
[»] chr4 (1 HSPs)
chr4 (168-237)||(34036289-34036358)
[»] chr1 (1 HSPs)
chr1 (169-234)||(16163998-16164063)
[»] chr7 (4 HSPs)
chr7 (168-209)||(19935380-19935421)
chr7 (168-209)||(19966519-19966560)
chr7 (270-310)||(31014384-31014424)
chr7 (168-237)||(31014454-31014529)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 53984800 - 53985161
Alignment:
Q  8 tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984800 tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac 53984899  T
Q  108 gtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatg 207  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984900 gtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatg 53984999  T
Q  208 ttgaagcacgtctagcatccacttccacttcctgccgcaacttctaacgttatggttgcagaagaatagctccatttgagttagattgtaaaacattggg 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53985000 ttgaagcacgtctagcatccacttccacttcctgccccaacttctaacgttatggttgcagaagaatagctccatttgagttagattgtaaaacattggg 53985099  T
Q  308 actgggagatggaggtgccatatctttatgtattataaagatatttcattagaaacccaatc 369  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  53985100 actgggagatggaggttccatatctgtatgtattataaagatatttcattagaaacccaatc 53985161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 53971095 - 53971418
Alignment:
Q  8 tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac 107  Q
    ||||||||||| || ||||||| ||||||||| |  |||||| |||||||||||||||||| ||| || ||||  ||||||| |||||| | | ||||||    
T  53971095 tgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaagac 53971194  T
Q  108 gtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactat 206  Q
     |||  ||||||| || ||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| |||||||    
T  53971195 atgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactat 53971292  T
Q  207 gttgaagcacgtctagcatccacttccacttcctgccgcaacttctaacgttatggttgcagaagaatagctccatttgagttagattgtaaaacattgg 306  Q
    |||  |||||||||||||||||| |||||||| |||| ||| || || | | || | |||||||||||||||||||||  |||||||||| |||  ||||    
T  53971293 gttagagcacgtctagcatccacctccacttcttgccccaaattttaccctcatagatgcagaagaatagctccattttggttagattgtgaaaagttgg 53971392  T
Q  307 gactgggagatggaggtgccatatct 332  Q
    |||||||| || || | |||||||||    
T  53971393 gactgggaaatagacgggccatatct 53971418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 53059842 - 53059802
Alignment:
Q  270 agaatagctccatttgagttagattgtaaaacattgggact 310  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  53059842 agaatagctccatttgagttagattgtaaaaaatggggact 53059802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 37419147 - 37419108
Alignment:
Q  270 agaatagctccatttgagttagattgtaaaacattgggac 309  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  37419147 agaatagctccatttgagttagattgtaaaaaatggggac 37419108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 53059941 - 53059871
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 238  Q
    |||||| ||||||| ||||||||||||| || ||| | || |||||||  |||||||||||| ||||||||    
T  53059941 aaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatccacttc 53059871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 53062954 - 53062884
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 238  Q
    |||||| ||||||| ||||||||| ||| || ||||| || |||||||  |||||||||||| ||||||||    
T  53062954 aaacctcatgaatgataagatgttaaagctttggactgtgctgaagcatttctagcatccacgtccacttc 53062884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 37419236 - 37419176
Alignment:
Q  178 aatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 238  Q
    |||| ||||||||||||| || ||||| | ||||||||  |||||||||||| ||||||||    
T  37419236 aatgataagatgttgaagctttggactgttttgaagcatttctagcatccacgtccacttc 37419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca 224  Q
    |||||| ||||||| ||||||||||||| || ||||| ||||||||||  |||||||    
T  53071964 aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca 53071908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 6688157 - 6688087
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 238  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||| ||||||||||||||||    
T  6688157 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttccacttc 6688087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 34036358 - 34036289
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccactt 237  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||||||||||| |||||||    
T  34036358 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccacctccactt 34036289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 16163998 - 16164063
Alignment:
Q  169 aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttcca 234  Q
    |||||||||||||| |||||||| ||| ||||| || ||||||||||| |||||||||||| ||||    
T  16163998 aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccacctcca 16164063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 209  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19935421 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19935380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 209  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19966560 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19966519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 31014424 - 31014384
Alignment:
Q  270 agaatagctccatttgagttagattgtaaaacattgggact 310  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  31014424 agaatagctccatttgagttagattgtaaaaaatggggact 31014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 31014529 - 31014454
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagc------acgtctagcatccacttccactt 237  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||||||      || ||||||||||||||||||||    
T  31014529 aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagcatttctacttctagcatccacttccactt 31014454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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