View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_high_11 (Length: 324)
Name: NF1356_high_11
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 87 - 312
Target Start/End: Complemental strand, 43852887 - 43852658
Alignment:
| Q |
87 |
aacgattcgtcattcaattcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggaaggaggttatataattgtcatt |
186 |
Q |
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| T |
43852887 |
aacgattcgtcattcaattcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggagggaggttatataattgtcatt |
43852788 |
T |
|
| Q |
187 |
aattagtgtcacttcgactaataaaaactttcatcttccttgttctttttt----nnnnnnnnnncaagaagagattaagaatatatatgatcttatttc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
43852787 |
aattagtgtcacttcgactaataaaaactttcatcttccatgttctttttttaaaataaaaaaaaaaaaaagagattaagaatatatatgatcttatttc |
43852688 |
T |
|
| Q |
283 |
aagttgttttcactttatttcaatgagaat |
312 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43852687 |
aagttgttttcactttatttcaatgagaat |
43852658 |
T |
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