View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_high_18 (Length: 264)
Name: NF1356_high_18
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6440331 - 6440565
Alignment:
| Q |
1 |
tatagtttgtttgtagtttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttatgaagttgggaaata |
100 |
Q |
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| T |
6440331 |
tatagtttgtttgtagtttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttatgaagttgggaaata |
6440430 |
T |
|
| Q |
101 |
gaaggtaaaataccagattcaatgtctgctttgatacaatgtgaaattcattatcgttaacctcaatgagttcattgtcacattcctcgttccaacattt |
200 |
Q |
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| T |
6440431 |
gaaggtaaaataccagattcaatgtctgctttgatacaatgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacattt |
6440530 |
T |
|
| Q |
201 |
ggtcatctcactccttcaatgtagcaagtattgaa |
235 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
6440531 |
ggtcgtctcactccttcaatgtagcaagtattgaa |
6440565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 34765340 - 34765258
Alignment:
| Q |
139 |
atgtgaaattcattatcgttaacctcaatgagttcattgtcacattcctcgttccaacatttggtcatctcactccttcaatg |
221 |
Q |
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| T |
34765340 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatg |
34765258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 44016068 - 44016000
Alignment:
| Q |
18 |
ttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttat |
86 |
Q |
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| T |
44016068 |
ttgagtaactgcacaagccttgcaactgtccagcttgacaagaatcagttatcaggtacaattccttat |
44016000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 905141 - 905212
Alignment:
| Q |
164 |
caatgagttcattgtcacattcctcgttccaacatttggtcatctcactccttcaatgtagcaagtattgaa |
235 |
Q |
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|||||| ||||||||||||||| || |||||||| || ||| ||| |||||||||||| | ||||| ||||| |
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| T |
905141 |
caatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaa |
905212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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