View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_high_2 (Length: 514)
Name: NF1356_high_2
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 53763233 - 53763311
Alignment:
| Q |
40 |
tgagtgagcgtctatatactgttatactccgataaaacctcaaggcgctttgagtttaatgtcttcacaaattgatttt |
118 |
Q |
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| T |
53763233 |
tgagtgagcgtctatatactgttatactccgataaaacctcaaggcgctttgagtttaatgtcttcacaaattgatttt |
53763311 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 53763554 - 53763619
Alignment:
| Q |
433 |
tgtgcgaccatgaagacttatatgcgacaaaaacaacttaaaatgttaatctcttacaaacctcaa |
498 |
Q |
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| T |
53763554 |
tgtgtgaccatgaagacttatgtgcgaccaaaacaacttaaaatgttaatctcttacaaacctcaa |
53763619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 442
Target Start/End: Original strand, 53763548 - 53763583
Alignment:
| Q |
407 |
ggcttgtgtgtaaccatgaagacttatgtgcgacca |
442 |
Q |
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| T |
53763548 |
ggcttgtgtgtgaccatgaagacttatgtgcgacca |
53763583 |
T |
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