View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_high_3 (Length: 484)
Name: NF1356_high_3
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Original strand, 4105769 - 4106219
Alignment:
| Q |
10 |
atgaacaacagcaacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccattt |
109 |
Q |
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| T |
4105769 |
atgaacaacagcaacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccattt |
4105868 |
T |
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| Q |
110 |
ggacagcacaaccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttt |
209 |
Q |
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| T |
4105869 |
ggacagcacaaccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttt |
4105968 |
T |
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| Q |
210 |
taagtttcctactgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttc |
309 |
Q |
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| T |
4105969 |
taagtttcctactgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttc |
4106068 |
T |
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| Q |
310 |
caactttattttaatgatgatgatcataatctcatgttaagtccacttgcatggcctactcaatttcgttacaatttttactatagaattgaagt---ta |
406 |
Q |
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| T |
4106069 |
caactttattttaatgatgatgatcataatctaatgttaagtccacttgcatggcctactcaatttcgttacaatttttactatagaattgaagttaata |
4106168 |
T |
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| Q |
407 |
ataactctgcatcttcaagtttagtttttgatgaatcaggagatatttatg |
457 |
Q |
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| T |
4106169 |
ataactctgcatcttcaagtttagtttttgatgaatcaggagatatttatg |
4106219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 4128965 - 4129406
Alignment:
| Q |
16 |
aacagcaacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacag |
115 |
Q |
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|||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||| |
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| T |
4128965 |
aacaacaacaacctcgtacaagcaccgacaggatcacaagttcagctaacatcaggaggactcacgttgacaactcaacaaggtgaatccatttggacag |
4129064 |
T |
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| Q |
116 |
cacaaccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtt |
215 |
Q |
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| T |
4129065 |
cacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtt |
4129164 |
T |
|
| Q |
216 |
tcctactgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttccaactt |
315 |
Q |
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| T |
4129165 |
tcccaccgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagagaccaactacacaagtgggaggttccaactt |
4129264 |
T |
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| Q |
316 |
tattttaatgatgatgatcataatctcatgttaagtccacttgcatggcctactcaatttcgttacaatttttactatagaattgaagttaataactctg |
415 |
Q |
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| T |
4129265 |
tattttcgtgatgatgatcataatctcatgttaagtccacttgcatggcctactcaattacgttacaaattttactatagaattgatgttaataactctg |
4129364 |
T |
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| Q |
416 |
catcttcaagtttagtttttgatgaatcaggagatatttatg |
457 |
Q |
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| T |
4129365 |
catcttcaagtttagtttttgatgaatcaggagatatttatg |
4129406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 304 - 457
Target Start/End: Original strand, 4100602 - 4100757
Alignment:
| Q |
304 |
aggttccaactttattttaatgatgatgatcataatctcatgttaagtccacttgcatggcctactcaatttcgttacaatttttactatagaattgaag |
403 |
Q |
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| T |
4100602 |
aggttccaactttattttaatgatgatgaccataatctaatgttaagtccacttgcatggcctgctcaatttcgttacaatttttactatagaattgatg |
4100701 |
T |
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| Q |
404 |
ttaata--actctgcatcttcaagtttagtttttgatgaatcaggagatatttatg |
457 |
Q |
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| T |
4100702 |
ttaataacactctgcatcttcaagtttagtttttgatgaatcaggagatatttatg |
4100757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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