View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_high_4 (Length: 406)
Name: NF1356_high_4
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 6440334 - 6440012
Alignment:
| Q |
15 |
tataaaatcagtgcctacataaaccagaaagtataaacatagtatacaatcattgcctagcttaatcgtggtggaaaagaaaaaatctagcaacatatgc |
114 |
Q |
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| T |
6440334 |
tataaaatcagtgcctacataaaccagaaagtataaacatagtatacaatcattgcctagcttaatcgtggtggaaaagaaaaaatctagcaacatatgc |
6440235 |
T |
|
| Q |
115 |
ttctatcttatcacatcagtgaaatatgaattagcaataatatgaatttggatcttttttagaaagtacatgttctggcatatttcgttagcctgaaatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6440234 |
ttctatcttatcacatcagtgaaatatgaattagcaataatatgaatttggatcttttttagaaagtacatgttctggcatatttcgttagcctgaaatc |
6440135 |
T |
|
| Q |
215 |
atctggaagtgatcgttctaaatgaagaattaaaatttatgttatttccttttacacagaacttacaaccactactatcctatatatttttggttccaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6440134 |
atctggaagtgatcgttctaaatgaagaattaaaatttatgttatttccttttacacagaacttacaaccactactatcctatatatttttggttccaat |
6440035 |
T |
|
| Q |
315 |
tgctctttctattatattcttgg |
337 |
Q |
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|||||||||||||||||| |||| |
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| T |
6440034 |
tgctctttctattatatttttgg |
6440012 |
T |
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