View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1356_high_9 (Length: 341)

Name: NF1356_high_9
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1356_high_9
NF1356_high_9
[»] chr2 (28 HSPs)
chr2 (22-245)||(18779238-18779461)
chr2 (48-245)||(41643886-41644081)
chr2 (49-245)||(6177790-6177983)
chr2 (48-245)||(27138860-27139054)
chr2 (48-243)||(34441764-34441955)
chr2 (66-234)||(19073390-19073556)
chr2 (48-245)||(42005403-42005596)
chr2 (67-243)||(15650881-15651055)
chr2 (48-245)||(18947449-18947632)
chr2 (66-245)||(18059201-18059378)
chr2 (48-243)||(41713178-41713369)
chr2 (48-222)||(30844858-30845033)
chr2 (164-243)||(39788451-39788530)
chr2 (166-218)||(38250000-38250052)
chr2 (48-121)||(39788538-39788611)
chr2 (55-209)||(58043-58198)
chr2 (48-222)||(43446320-43446496)
chr2 (163-222)||(7553481-7553540)
chr2 (172-222)||(32651973-32652023)
chr2 (255-323)||(3646821-3646889)
chr2 (172-219)||(40913164-40913211)
chr2 (83-153)||(45414325-45414395)
chr2 (48-84)||(18514769-18514805)
chr2 (55-139)||(38255544-38255628)
chr2 (47-82)||(4763641-4763676)
chr2 (254-324)||(15635498-15635568)
chr2 (48-82)||(26357591-26357625)
chr2 (169-213)||(6348853-6348897)
[»] chr3 (24 HSPs)
chr3 (47-245)||(7568558-7568754)
chr3 (48-243)||(40640472-40640668)
chr3 (48-245)||(38392467-38392662)
chr3 (48-245)||(49359467-49359662)
chr3 (55-242)||(44880813-44880996)
chr3 (48-245)||(32180590-32180781)
chr3 (48-245)||(19606753-19606948)
chr3 (48-243)||(45879328-45879532)
chr3 (48-245)||(47930506-47930700)
chr3 (167-245)||(7758262-7758340)
chr3 (161-243)||(26000657-26000739)
chr3 (163-245)||(51878241-51878323)
chr3 (48-193)||(4556554-4556702)
chr3 (88-222)||(43485365-43485497)
chr3 (48-153)||(18272153-18272257)
chr3 (48-222)||(42204356-42204530)
chr3 (48-195)||(53811865-53812010)
chr3 (141-222)||(47870299-47870377)
chr3 (172-222)||(48155075-48155125)
chr3 (88-222)||(54606760-54606892)
chr3 (88-151)||(5124726-5124789)
chr3 (173-219)||(11018554-11018600)
chr3 (66-125)||(26000555-26000614)
chr3 (48-82)||(37157713-37157747)
[»] chr5 (24 HSPs)
chr5 (48-243)||(22616508-22616700)
chr5 (52-245)||(36055713-36055904)
chr5 (48-245)||(10237428-10237622)
chr5 (74-245)||(31878423-31878592)
chr5 (48-243)||(21320765-21320958)
chr5 (74-245)||(41417418-41417587)
chr5 (48-245)||(33163527-33163724)
chr5 (87-222)||(25653637-25653770)
chr5 (102-219)||(10053291-10053406)
chr5 (88-222)||(33752910-33753042)
chr5 (114-245)||(27579108-27579235)
chr5 (88-220)||(26411351-26411481)
chr5 (88-222)||(33848549-33848681)
chr5 (169-222)||(13887374-13887427)
chr5 (48-222)||(13380509-13380685)
chr5 (163-222)||(12081129-12081188)
chr5 (163-222)||(21266146-21266205)
chr5 (172-222)||(8777275-8777325)
chr5 (172-213)||(25513911-25513952)
chr5 (182-222)||(25521705-25521745)
chr5 (47-82)||(5748441-5748476)
chr5 (48-83)||(12910364-12910399)
chr5 (47-82)||(26317811-26317846)
chr5 (48-82)||(5112440-5112474)
[»] chr1 (16 HSPs)
chr1 (50-245)||(27118346-27118539)
chr1 (74-245)||(10758139-10758308)
chr1 (48-243)||(13876760-13876953)
chr1 (50-245)||(16127536-16127726)
chr1 (62-236)||(16132503-16132675)
chr1 (88-245)||(15964154-15964309)
chr1 (103-245)||(31804923-31805063)
chr1 (74-245)||(25943238-25943407)
chr1 (82-222)||(421441-421579)
chr1 (172-222)||(21263907-21263957)
chr1 (255-324)||(2344368-2344437)
chr1 (91-153)||(28012123-28012185)
chr1 (83-221)||(17695870-17696012)
chr1 (48-83)||(10182139-10182174)
chr1 (48-82)||(2959758-2959792)
chr1 (53-82)||(9903186-9903215)
[»] chr7 (15 HSPs)
chr7 (49-245)||(23402211-23402404)
chr7 (48-245)||(22955151-22955346)
chr7 (48-236)||(7742933-7743119)
chr7 (50-245)||(37854135-37854326)
chr7 (52-245)||(5781536-5781725)
chr7 (50-245)||(4618594-4618787)
chr7 (47-245)||(49002240-49002433)
chr7 (48-245)||(8133398-8133595)
chr7 (93-222)||(19786343-19786470)
chr7 (48-154)||(4902354-4902460)
chr7 (164-245)||(40382016-40382098)
chr7 (181-251)||(4902465-4902535)
chr7 (47-82)||(31520861-31520896)
chr7 (172-222)||(8758426-8758476)
chr7 (48-80)||(46481217-46481249)
[»] chr8 (14 HSPs)
chr8 (48-243)||(4108755-4108946)
chr8 (90-245)||(3038462-3038615)
chr8 (48-245)||(7290734-7290928)
chr8 (180-245)||(23176625-23176690)
chr8 (76-245)||(6267344-6267508)
chr8 (48-146)||(23176701-23176797)
chr8 (55-245)||(18756506-18756685)
chr8 (51-123)||(8151371-8151443)
chr8 (89-221)||(35735844-35735973)
chr8 (172-222)||(1879088-1879138)
chr8 (172-222)||(1835247-1835297)
chr8 (164-241)||(30380955-30381034)
chr8 (50-97)||(28220940-28220987)
chr8 (48-82)||(34894980-34895014)
[»] scaffold0200 (1 HSPs)
scaffold0200 (50-245)||(24657-24849)
[»] chr6 (13 HSPs)
chr6 (48-245)||(19631763-19631958)
chr6 (48-245)||(26301764-26301957)
chr6 (48-245)||(11083993-11084186)
chr6 (110-245)||(34993907-34994040)
chr6 (164-245)||(30341152-30341233)
chr6 (60-144)||(4102864-4102948)
chr6 (172-222)||(25441098-25441148)
chr6 (47-122)||(30338489-30338564)
chr6 (172-222)||(4488444-4488494)
chr6 (163-195)||(4103038-4103070)
chr6 (48-82)||(3005393-3005427)
chr6 (165-195)||(4102980-4103010)
chr6 (203-245)||(4104183-4104225)
[»] chr4 (22 HSPs)
chr4 (47-245)||(54995638-54995834)
chr4 (77-243)||(1012339-1012504)
chr4 (48-245)||(2266695-2266890)
chr4 (50-245)||(9743604-9743799)
chr4 (48-237)||(17612349-17612535)
chr4 (48-154)||(2704526-2704630)
chr4 (163-245)||(2708000-2708082)
chr4 (114-245)||(2570558-2570687)
chr4 (87-222)||(33036064-33036196)
chr4 (48-153)||(51204593-51204702)
chr4 (48-152)||(20097417-20097525)
chr4 (102-222)||(17513008-17513126)
chr4 (89-222)||(22756794-22756924)
chr4 (48-193)||(28293124-28293271)
chr4 (172-222)||(5915657-5915707)
chr4 (174-222)||(5812705-5812753)
chr4 (163-222)||(47236989-47237048)
chr4 (172-222)||(37793520-37793570)
chr4 (100-222)||(22729777-22729896)
chr4 (48-105)||(33255513-33255570)
chr4 (168-219)||(33255572-33255621)
chr4 (107-176)||(51959922-51959989)
[»] scaffold0050 (1 HSPs)
scaffold0050 (89-245)||(5645-5799)
[»] scaffold0312 (1 HSPs)
scaffold0312 (47-222)||(8993-9170)
[»] scaffold0262 (1 HSPs)
scaffold0262 (164-219)||(12031-12086)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 18779461 - 18779238
Alignment:
Q  22 attataacgaaataaaagtttatgaatgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 121  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18779461 attacaacgaaataaaagtttatgaatgaagtcataaaaatgactttattgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 18779362  T
Q  122 acgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaaca 221  Q
    || ||| ||||||||||||||||||||||||||||||  |||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||    
T  18779361 acatcagattatatggtttattgcacatttgccataataaagtgtgttattttatctttacttattgcaattgtgttcctgattaaatcaaagttaaaca 18779262  T
Q  222 tagattctcatttgtgcactaaga 245  Q
    ||||||||||||||||||||||||    
T  18779261 tagattctcatttgtgcactaaga 18779238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 41643886 - 41644081
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  41643886 tgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcac 41643985  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||  || |  | |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  41643986 atttg--atcataaggtgtgtcattatatctttacttattgcaattgtatccctgattaaatcaaaattaaacatagtttctcatttgtgcactaaga 41644081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 6177790 - 6177983
Alignment:
Q  49 gaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcaca 148  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||    
T  6177790 gaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgca 6177889  T
Q  149 tttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||| |||||   | || ||||||||||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  6177890 tttgcccata---aggtatgtcattatatatttacttattccaattgtgtccctgattaaatcaaa-ataaacatagattctcatttgtgcactaaga 6177983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 27139054 - 27138860
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||| |||||| ||| |||||||     
T  27139054 tgaagtcatgaaaatgacttttttgatgaagttaaatggccaatcattgatcatttgtgtatt-aatccatgtcacgtcagattatacggtgtattgcat 27138956  T
Q  148 atttgcc-ataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||| |||||   |||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  27138955 atttgcccataaa---gtgtgtcattatatctttacgggttgcaattgtgtccctgattaaatcaaaattaaacatagattcccatttgtgcactaaga 27138860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 34441955 - 34441764
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||||||||||||| | ||||||||||  |||| |||||  |||||||||||||||||||||||||||||  |||||||| ||||||||    
T  34441955 tgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtcacgtcat--tatatggtgtattgcac 34441858  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    |||||||    ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34441857 atttgccc---ataagatgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaa 34441764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 19073390 - 19073556
Alignment:
Q  66 ttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtg 165  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |||| |||||||| | || | | |||    
T  19073390 ttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtc-tata-aggtg 19073487  T
Q  166 tgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcattt 234  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19073488 tgtcattatatatttacttattgaaattgtgtccctgattaaatcaaagttaaacatagattctcattt 19073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 42005403 - 42005596
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||||| ||||||| |||||||||||| |||| ||||||  |||||| |||||||| |||||||||||  |||||||||| ||||||||    
T  42005403 tgaagtcatgaaaatgatttttttggtgaagttaaatgatcaaccattgaatatttgtttatttaatccatgtcacgtc--attatatggtgtattgcac 42005500  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgt-ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||  |||||   | ||||||||||| || ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  42005501 attgcccata---aggtgtgtcattacatctttacttattgtaattgtgtcccctgattaaatcaaaattaaacatagattctcatttgtgcactaaga 42005596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 67 - 243
Target Start/End: Original strand, 15650881 - 15651055
Alignment:
Q  67 tttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tg 165  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||||| ||| |||||| | |||||||||| |||| ||||||||||    ||||| ||    
T  15650881 tttttgatgaagttaaatcgtcaatcattaaatatttgtgtatttaatccatatcacgtaagattatatggtgtatttcacatttgccc---ataaggtg 15650977  T
Q  166 tgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  15650978 tgtcattatatctttacttattgcaattgtgttcctgattaaatcaaaattaaacatagaatctcatttgtgcactaa 15651055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 18947632 - 18947449
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||| ||    
T  18947632 tgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaatccatgtcacgtcagattatatggtgtattgtac 18947533  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||   |||  ||||| ||||||||||||            ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  18947532 att---catccataagatgtgtcattata------------gcaattgtgtccctgattaaatcaaaagtaaacatagattctcatttgtgcattaaga 18947449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 18059378 - 18059201
Alignment:
Q  66 ttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagt 164  Q
    ||||||| ||| |||||||||||||| |||||  ||||||||||||||||||||||| |||| |||||||||| ||||||| ||||  ||||||    ||    
T  18059378 ttttttggtgatgttaaatggtcaattattgaatatttgtgtatttaattcatgtcatgtcagattatatggtgtattgcatatttatccataat---gt 18059282  T
Q  165 gtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||| ||||||| |||||||||||||||||||||| |||||| || ||| ||||| |||||||||| ||||||||||||||    
T  18059281 gtgttattatatctttacttattgcaattgtgtccttgattagattaaaattaaatatagattctcgtttgtgcactaaga 18059201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 41713178 - 41713369
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||| |||||||||||| |||| || |||| |||||||  ||||||||||  |||| ||||||||||||||||||||||||  |||||||| | || |||    
T  41713178 tgaaatcatgaaaatgatttttctggtgaaattaaatgaccaatcattgaatatttatgtatttaattcatgtcacgtcat--tatatggtgtgttacac 41713275  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    |||||||    ||||| ||||||||||||| | |||||||| ||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  41713276 atttgccc---ataagatgtgtcattatatgtatacttattacaattgtttccctaattaaatcaaaattaaacatagattctcacttgtgcactaa 41713369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 30844858 - 30845033
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    |||||| |||| ||||||||||  | |||||||||    ||| ||||||||||||||||  |||||||||| |||||||||||| |||||||| | ||||    
T  30844858 tgaagttatgagaatgacttttaaggtgaagttaatcccatgatcaatcattgagcattc-tgtatttaatccatgtcacgtcagattatatgatatatt 30844956  T
Q  144 gcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||| |||||   |  |||||||||| || ||||||||||||| ||| ||| || ||||||||||| ||||||||    
T  30844957 gcacatttgtccata---agatgtgtcattaaatctttacttattgcatttgagtctctaattaaatcaaaattaaacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 39788530 - 39788451
Alignment:
Q  164 tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    |||||||||||||| ||||||| ||||||| |||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  39788530 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacatagattctgatttgtgcactaa 39788451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 38250052 - 38250000
Alignment:
Q  166 tgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaa 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  38250052 tgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 38250000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 39788611 - 39788538
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 121  Q
    ||||||||| | |||||||||| |  |||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  39788611 tgaagtcataagaatgacttttctagtgaagtcaaatagtcaatcattgagcatttgtgtatttaatccatgtc 39788538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 58043 - 58198
Alignment:
Q  55 atgaaaatgacttttttgatgaagtta----aatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatt 150  Q
    |||| |||||||||||||||||||| |    ||||  |||||||| | ||| | ||||||||||||||||||  ||| |||||||||| |||||||||||    
T  58043 atgagaatgacttttttgatgaagtcatgagaatgaccaatcatttaacatatctgtatttaattcatgtcagatcaaattatatggtgtattgcacatt 58142  T
Q  151 tg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaat 209  Q
    ||  ||||     ||||| ||  ||||||||||||||||||||||||| |||||||||||    
T  58143 tgttcata---cggtgtgccacaatatttttacttattgcaattgtgt-cctgattaaat 58198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 43446496 - 43446320
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagtta----aatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||||||| ||||||||||| | ||||||||    |||| ||||||||||| |||||| |||| |||| |||  ||||||| |||||||||| | ||    
T  43446496 tgaagtcatgagaatgactttttcggtgaagttatgagaatgatcaatcattgaacatttgcgtatctaatgcataccacgtcaaattatatggtgtgtt 43446397  T
Q  144 gcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||| ||||| ||||     || ||||| ||||| |||||||||| ||||||||||| | || |||| ||| ||||||||    
T  43446396 gcacgtttgctcata---gggtatgtcactatatctttacttattacaattgtgtccttaataaaattaaaattaaacat 43446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 7553481 - 7553540
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||| ||| |||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  7553481 gtgtatcactatatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 7553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 32651973 - 32652023
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  32651973 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 32652023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 3646889 - 3646821
Alignment:
Q  255 catgaatcaatctggtaacctaccc-cagagggagtgttgtgaacccgaaaaacccttctgcttgttctt 323  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||| |||||    
T  3646889 catgaatcaatctggtaacctacccgcggagcgagtattgtgaacccg-aaaacccttctgcttcttctt 3646821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 40913211 - 40913164
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 219  Q
    |||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  40913211 tatatttttatttattgcaattgtgtccttgattaaatcaaaattaaa 40913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 45414395 - 45414325
Alignment:
Q  83 atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc 153  Q
    ||||||||| ||||||||||||| ||||||||  ||||||||||| | ||||||||  |||||| ||||||    
T  45414395 atggtcaattattgagcatttgtatatttaatctatgtcacgtcagaatatatggtgcattgcatatttgc 45414325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 18514805 - 18514769
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaat 84  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18514805 tgaagtcatgagaatgacttttttgatgaagttaaat 18514769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 38255628 - 38255544
Alignment:
Q  55 atgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtt 139  Q
    |||| |||||||||| |||| ||| ||||||  |||||||| || ||||||||||||||| |||| ||| ||| |||||| ||||    
T  38255628 atgataatgacttttctgattaagataaatgaccaatcattaagaatttgtgtatttaatccatgacacttcagattatagggtt 38255544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 4763641 - 4763676
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4763641 atgaagtcatgaaaatgacttttctgatgaagttaa 4763676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 15635568 - 15635498
Alignment:
Q  254 ccatgaatcaatctggtaacctaccc-cagagggagtgttgtgaacccgaaaaacccttctgcttgttcttc 324  Q
    |||||||||||||| ||||||||||| ||||| |||| ||||||||| | ||| ||||||||||| ||||||    
T  15635568 ccatgaatcaatctagtaacctacccgcagagcgagtattgtgaacctg-aaagcccttctgcttattcttc 15635498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 26357591 - 26357625
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||||||||| ||||||||||||    
T  26357591 tgaagtcatgaaaatgacttttctgatgaagttaa 26357625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 6348853 - 6348897
Alignment:
Q  169 cattatatttttacttattgcaattgtgtccctgattaaatcaaa 213  Q
    ||||||| |||||||||||||||||| |||| | |||||||||||    
T  6348853 cattatagttttacttattgcaattgggtccttaattaaatcaaa 6348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 7568754 - 7568558
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgca 146  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||    
T  7568754 atgaagtcatgaaaattacttttttggtgaagttaaatggtaaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatgcagtattgca 7568655  T
Q  147 catttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||| ||||   |||||||||||||||| |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  7568654 catttgcacata---aagtgtgtcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaacatagattctcatttgtgcactaaga 7568558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 40640668 - 40640472
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  40640668 tgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtcacgtcatattatatggtgtattgcac 40640569  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttat---tgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    |||||||    ||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||    
T  40640568 atttgcc---cataagatgtgtcattatatttttacttattgctgcaattgtgtccttgattaaatcaaaattaaagatatattctcatttgtgcactaa 40640472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 38392662 - 38392467
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||| | || |||||||| | ||||||||    
T  38392662 tgaagtcatgagaatgacttttttggtgaagttaaatggtcagtcattgaacatttgtgtatttaatccatgtcatgacagattatatgatgtattgcac 38392563  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||||   |||  |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  38392562 atttgcccataat--gtgtgtcattatatatttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattttcatttatgcactaaga 38392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 49359662 - 49359467
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||||| | ||||||||    
T  49359662 tgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaatccatgacacgtcatattatatgatgtattgcac 49359563  T
Q  148 atttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||| ||||   | |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||    
T  49359562 atttgctcata---aggtgtgtcattatatctttacttaatgcaattgtgtccctgattaaatcaaaattaaacatagatttctatttgtgcactaaga 49359467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 44880813 - 44880996
Alignment:
Q  55 atgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc 154  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| || ||||||| ||||||||||||||     
T  44880813 atgaaaatgacttttta-atgaagttaaatggtcaatcattgaacatttatgtatttaatccatgtcacgtcagataatatggtgtattgcacatttgct 44880911  T
Q  155 ataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcacta 242  Q
        ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  44880912 c---ataagggtgtcattatatctttacttattacaattgtgtccctgattaaatcaaaattaaacatagattcacatttgtgcacta 44880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 32180781 - 32180590
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||| |||| |||||||||| |  |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |||  |||||||    
T  32180781 tgaagttatgagaatgacttttctagtgaagttaaatggttaatcattgagcatttgtgtatttaatttatgtcacgtcagattatacggt--attgcac 32180684  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||| | |||    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  32180683 atttgtc-taag---gtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagatttccatttgtgcactaaga 32180590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 19606948 - 19606753
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||| || |||||||||||| || ||||||||||||  |||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||    
T  19606948 tgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaattcaggtcacgtcagattatatggtgtattgaac 19606849  T
Q  148 atttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||  ||||||    |||||||||||||| ||||||| ||||||| |||||||| ||||||||||| |||||||||||||  ||||||||||| ||||    
T  19606848 atttttccataag---gtgtgtcattatatctttacttgttgcaatcgtgtcccttattaaatcaaaattaaacatagatttccatttgtgcaccaaga 19606753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 45879532 - 45879328
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||    
T  45879532 tgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaatccatgccacgtcagattatatggtgtattgcac 45879433  T
Q  148 atttg----ccat----aaataa-gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgc 238  Q
    |||||     |||      |||| ||||||| |||||| ||||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  45879432 atttgttgcacatttgcccataaggtgtgtcgttatatctttacttattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgc 45879333  T
Q  239 actaa 243  Q
    |||||    
T  45879332 actaa 45879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 47930700 - 47930506
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||||| |||| || ||||||||||||  |||||||||| |||||||||||||||| ||||| |  ||  |||||||||| ||||||||    
T  47930700 tgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgttatatcg-attatatggtgtattgcac 47930602  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
     |||| |   || | ||||  ||||||   |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  47930601 ctttgtccctaagacgtgt--cattattcctttacttattgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaaga 47930506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 7758340 - 7758262
Alignment:
Q  167 gtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  7758340 gtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcatttgtgcactaaga 7758262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 26000657 - 26000739
Alignment:
Q  161 aagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    ||||||||||||||   |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  26000657 aagtgtgtcattatcgctttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattctcatttgtgcactaa 26000739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 51878241 - 51878323
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||| ||| |||||||||||||||||||| ||||||||||    
T  51878241 gtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacatagattctcatttatgcactaaga 51878323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 4556554 - 4556702
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa-atggtcaatcattgagcatttgtgtatttaa----ttcatgtcacgtcatattatatggtttat 142  Q
    |||||||||||||||||||||| |  ||||||||  |||  ||||||||||| ||||||||||||||    |||||||||||||| |||||||||  |||    
T  4556554 tgaagtcatgaaaatgacttttctcgtgaagttactatgaccaatcattgagtatttgtgtatttaattaattcatgtcacgtcagattatatggcgtat 4556653  T
Q  143 tgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 193  Q
    ||||||||||| ||||   | |||||||||||||| |||||||||| |||||    
T  4556654 tgcacatttgctcata---atgtgtgtcattatatctttacttattacaatt 4556702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 43485365 - 43485497
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttatt 187  Q
    |||||||||| |||||   ||||||||||||| ||| ||| ||||||||||  |||||| |||||||   || |  ||||||||||||||||||||||||    
T  43485365 caatcattgaacattttcatatttaattcatgccacttcagattatatggtgcattgcatatttgcccctaaga--tgtgtcattatatttttacttatt 43485462  T
Q  188 gcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    | ||||| |||||||||||||| ||| ||||||||    
T  43485463 gtaattgagtccctgattaaattaaaattaaacat 43485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 18272257 - 18272153
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| |||||||||| | |||| ||||| |   |||||||||| |||||||||||||||||||| ||| |||| |||||||||| ||||||||    
T  18272257 tgaagtcatgagaatgacttttctaatgacgttaactcc-caatcattgaacatttgtgtatttaattcatatcaagtcagattatatggtgtattgcac 18272159  T
Q  148 atttgc 153  Q
    ||||||    
T  18272158 atttgc 18272153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 42204356 - 42204530
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||| ||| |||||||||| ||||||||||||    |||  | || ||||||||||||||||||||||  ||||||| ||  |||||||||| ||||    
T  42204356 tgaagtcgtgagaatgacttttctgatgaagttaaccatatgacctattattgagcatttgtgtatttaatctatgtcacatcggattatatggtgtatt 42204455  T
Q  144 gcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||| |||| | |||||    ||||||||| |||| ||||||||||||||||| || ||||||||||||||| ||||||||    
T  42204456 gcatatttactcataag---gtgtgtcat-atatctttacttattgcaattgagt-cctgattaaatcaaaattaaacat 42204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 53812010 - 53811865
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||||||| |||||||||| ||||||||||||    ||||||| |    || ||||| |||||||||| |||||||||||| |||||||||| ||||    
T  53812010 tgaagtcatgagaatgacttttctgatgaagttaatgctatggtcagt----gaacatttatgtatttaatccatgtcacgtcagattatatggtgtatt 53811915  T
Q  144 gcacatttgccataaataa-gtgtgtcattatatttttacttattgcaattgt 195  Q
     ||||||||   || |||| |||||||||||||| |||||||| |||||||||    
T  53811914 ccacatttg---tacataaggtgtgtcattatatctttacttaatgcaattgt 53811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 47870299 - 47870377
Alignment:
Q  141 attgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||||||||    |||||||||||||| ||||| ||||||||||| |||| ||||||||||||| | ||||||    
T  47870299 attgcacatttgccataag---gtgtgtcattatatctttacgtattgcaattgagtccttgattaaatcaaaatcaaacat 47870377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 48155125 - 48155075
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  48155125 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 48155075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 54606760 - 54606892
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttat 186  Q
    |||||||||| ||||||||||||||||  |||||| |||| || ||| ||| |||||||||||| | ||||     |||||    |||||||||||||||    
T  54606760 caatcattgaacatttgtgtatttaatgtatgtcatgtcaaatcatacggtgtattgcacatttactcatacg---gtgtgctgctatatttttacttat 54606856  T
Q  187 tgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||| || ||||||||| ||| ||||||||    
T  54606857 tgcaattgtgcccttgattaaattaaaattaaacat 54606892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 5124726 - 5124789
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacattt 151  Q
    |||||||||| ||||||||||||||||  |||||| |||| |||||| ||| ||||||||||||    
T  5124726 caatcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacggtgtattgcacattt 5124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 11018554 - 11018600
Alignment:
Q  173 atatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 219  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  11018554 atatttttacttattgcaattgtatccctaattaaatcaaaattaaa 11018600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 26000555 - 26000614
Alignment:
Q  66 ttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgt 125  Q
    ||||||| | || ||||||| || || ||||| |||||||||||||||||||||||||||    
T  26000555 ttttttggtaaaattaaatgatcgattattgaacatttgtgtatttaattcatgtcacgt 26000614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 37157713 - 37157747
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||| ||||||||||||||||||    
T  37157713 tgaagtcatgaaaatggcttttttgatgaagttaa 37157747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 22616508 - 22616700
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||| ||    
T  22616508 tgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagcatta-tgtatttaatccatgtcacgtcatattatatggtgtattggac 22616606  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    |||||||    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22616607 atttgccc---ataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaa 22616700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 36055904 - 36055713
Alignment:
Q  52 gtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacattt 151  Q
    ||||||| |||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||| ||||| ||||||||||||    
T  36055904 gtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaattcatgtcgcatcagattacatggtgtattgcacattt 36055805  T
Q  152 gc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    || |||||    |||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  36055804 gctcataag---gtgtgtcattatatctttacttattacaattgtgtccccgattaaatcaaaattaaacatagattctcatttgtgcactaaga 36055713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 10237428 - 10237622
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |    
T  10237428 tgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatttcacgtcagattatatggtgtattgcgc 10237527  T
Q  148 atttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||| |||||   | || | ||||||||| |||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||| ||||||||    
T  10237528 atttgtccata---aggtatttcattatatatttacttattccaattgtgtcccagattaaatcaaa-ataaacatagattctcatttgtacactaaga 10237622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 31878423 - 31878592
Alignment:
Q  74 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcatta 173  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | || | | |||||||||||    
T  31878423 tgaagttaaattgtcaatcattaagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgtc-tata-aggtgtgtcatta 31878520  T
Q  174 tatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  31878521 tatctttacttatgacaattgtgtccctgattaaatcaaaattaaacatagattcctatttgtgcactaaga 31878592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 21320765 - 21320958
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||| ||| |||||||||| |||||||     
T  21320765 tgaagtaataaaaatgacttttttgatgaagttaaatgatcaatcattgagcattcgtgtatttaactaatgccacatcagattatatggtgtattgcat 21320864  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    ||||||   | ||||| ||| ||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  21320865 atttgc---atataagatgtatcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaacatagattctcatttgagcactaa 21320958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 41417587 - 41417418
Alignment:
Q  74 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcatt 172  Q
    |||||||||||||| ||||||||| ||||||||||||||||| || ||| |||| |||||||||| ||||||| |||||| |||||    ||||||||||    
T  41417587 tgaagttaaatggttaatcattgaacatttgtgtatttaatttatatcatgtcagattatatggtgtattgcaaatttgctcataag---gtgtgtcatt 41417491  T
Q  173 atatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
     ||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  41417490 ttatctttacttattgcaattgtgtcccagattaaatcaaaattaaacatagattctcatttgtgcactaaga 41417418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 33163527 - 33163724
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatat--ggtttattgc 145  Q
    ||||||||||||||||| ||||| | || |||||||||   ||||||| | ||||||||| ||||||  ||| ||| ||| |||||||  ||| ||||||    
T  33163527 tgaagtcatgaaaatgattttttcggtggagttaaatgtctaatcattaaacatttgtgtgtttaatctatgccacatcagattatatatggtgtattgc 33163626  T
Q  146 acatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaag 244  Q
    ||||||  ||||||    ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||    
T  33163627 acatttatccataag---gtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacataaattctcatgtgtgcattaag 33163723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 25653637 - 25653770
Alignment:
Q  87 tcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttactta 185  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||| |||||| |||||||||||||| ||||   | |||||||||||||| ||||||||    
T  25653637 tcaatcattgagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacatttgctcata---aggtgtgtcattatatctttactta 25653733  T
Q  186 ttgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||| | | ||||||||||||||||| ||||||||    
T  25653734 ttgcaactatttccctgattaaatcaaaattaaacat 25653770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 10053291 - 10053406
Alignment:
Q  102 ttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccc 200  Q
    ||||||||||||| ||||| |||||  ||||||| || |||||||||||||| |||||    |||||||||||||| ||||||||||||||||| |||||    
T  10053291 ttgtgtatttaatccatgttacgtcggattatatcgtgtattgcacatttgctcataag---gtgtgtcattatatctttacttattgcaattgagtccc 10053387  T
Q  201 tgattaaatcaaagttaaa 219  Q
    ||||||||||||| |||||    
T  10053388 tgattaaatcaaaattaaa 10053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 33753042 - 33752910
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttat 186  Q
    |||||||| | ||||||||||||||||  ||||||| ||| |||||| ||||||||||||||||| ||| |   | |||||| ||| ||| |||||||||    
T  33753042 caatcatttaccatttgtgtatttaatcaatgtcacttcagattatagggtttattgcacatttgtccaca---aggtgtgttattgtatctttacttat 33752946  T
Q  187 tgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||| ||||||||||||||||||| ||| ||||||||    
T  33752945 tgccattgtgtccctgattaaataaaatttaaacat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 27579108 - 27579235
Alignment:
Q  114 ttcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaa 213  Q
    |||||||||||||| |||||||||| ||||||| ||||||| || | ||||| |||||||||| |||| |||||||||||||||| || |||||||||||    
T  27579108 ttcatgtcacgtcagattatatggtgtattgcatatttgcc-tata-aagtgcgtcattatatctttatttattgcaattgtgtctctaattaaatcaaa 27579205  T
Q  214 gttaaacatagattctcatttgtgcactaaga 245  Q
      |||||||  |||  ||||||||||||||||    
T  27579206 agtaaacat--atttccatttgtgcactaaga 27579235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 26411351 - 26411481
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttat 186  Q
    ||||||||||  |||| |||||||||| |||||||||||| |||||||||| ||||| |||||||| ||||    ||| || || ||||| |||||||||    
T  26411351 caatcattgaatatttatgtatttaatacatgtcacgtcaaattatatggtgtattgtacatttgctcata---cagtatgccactatatatttacttat 26411447  T
Q  187 tgcaattgtgtccctgattaaatcaaagttaaac 220  Q
    ||||||||| ||||| ||||||||||| ||||||    
T  26411448 tgcaattgtatccctaattaaatcaaaattaaac 26411481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 33848681 - 33848549
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttatt 187  Q
    |||||||| ||||||||||||||||||  ||||||| ||| |||||| | ||||||||||||||| |   |||  |||||| ||| ||| |||| |||||    
T  33848681 caatcatttagcatttgtgtatttaatcaatgtcacttcagattataggatttattgcacatttgtccacaat--gtgtgttattgtatctttatttatt 33848584  T
Q  188 gcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |  |||||||| |||||||||||||| ||||||||    
T  33848583 gtcattgtgtctctgattaaatcaaaattaaacat 33848549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 13887374 - 13887427
Alignment:
Q  169 cattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  13887374 cattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 13380509 - 13380685
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||||||| |||||||||| |  |||||||||    ||| ||| | | |||| |||||||||||||||   | | |||||||| || ||||| ||||    
T  13380509 tgaagtcatgagaatgacttttctagtgaagttaaccctatgatcacttaatgagtatttgtgtatttaatctttataacgtcatactacatggtgtatt 13380608  T
Q  144 gcacatttgcc-ataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||| || |||||  |   ||||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||    
T  13380609 gcacatttacccataaaata---tgtcattatatctttatttattgcaattgtatccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 12081188 - 12081129
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||| |||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  12081188 gtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaacat 12081129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 21266146 - 21266205
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||| ||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  21266146 gtgtatcattatatctttacttattgcaattgagtctctgattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 8777325 - 8777275
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  8777325 tatatttttacttattgcaattgtgtccttcgttaaatcaaaattaaacat 8777275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 25513911 - 25513952
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaa 213  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  25513911 tatatttttacttattgcaattgtctccttgattaaatcaaa 25513952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 25521745 - 25521705
Alignment:
Q  182 cttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  25521745 cttattgcaattgtgtccttgattaaatcaaaattaaacat 25521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 5748441 - 5748476
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||||||||||||| |||||||||    
T  5748441 atgaagtcatgaaaatgacttttttggtgaagttaa 5748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 12910364 - 12910399
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaa 83  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12910364 tgaagtcatgaaaatgacttttttggtgaagttaaa 12910399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 26317846 - 26317811
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||||||||||||| |||||||||    
T  26317846 atgaagtcatgaaaatgacttttttggtgaagttaa 26317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 5112474 - 5112440
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    ||||||||||||||||||||||||| |||||||||    
T  5112474 tgaagtcatgaaaatgacttttttggtgaagttaa 5112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 27118346 - 27118539
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacat 149  Q
    ||||||||||||||||||||||||| ||||||||| || |||||| |||||||| |||||||||| |||| |||||||||||||||| | ||||||||||    
T  27118346 aagtcatgaaaatgacttttttgataaagttaaatagttaatcatggagcatttatgtatttaatccatgccacgtcatattatatgatgtattgcacat 27118445  T
Q  150 ttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||  |||||    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  27118446 ttgttcataag---gtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcattcgtgcactaaga 27118539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 10758308 - 10758139
Alignment:
Q  74 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcatta 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||||| |||||||||   | |  |||||||||||    
T  10758308 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgccacatcagattatatggtgtattgaacatttgcctatagt--gtgtgtcatta 10758211  T
Q  174 tatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  10758210 tatttttacttattgcaattgtgtccctaattaaatcaaaattaaacatatattctcatttgtgcactaaga 10758139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 13876953 - 13876760
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||| ||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||  ||| |||||||||| ||||||| |||| |||    
T  13876953 tgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaatcaatgccacgtcatatcatatggtgtattacac 13876854  T
Q  148 atttgcc-ataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    ||||||| |||||   ||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  13876853 atttgcccataaa---gtgtgtcattatatttttagttattgcaattgtatccttgattaaatcaaaattaaacatagattcccatttgtgcactaa 13876760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 16127536 - 16127726
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacat 149  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||||||| | ||||||||||    
T  16127536 aagtcatgaaaatgacttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaatccatgacacgtcagattatatgatgtattgcacat 16127635  T
Q  150 ttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    || | ||||   | |||||||||||||| |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16127636 ttactcata---aggtgtgtcattatatgtttacttattgcaat--tgtccctgaataaatcaaa-ttaaacatagattctcatttgtgcactaaga 16127726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 16132503 - 16132675
Alignment:
Q  62 tgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaata 161  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||||||| ||||  |||| | |||||| ||| ||||||||||||||   | |||    
T  16132503 tgacttttttggtgaagttaaatggcaaattattgagcatttgtgtatttaatccatgcaacgtgagattatacggtgtattgcacatttgc---acata 16132599  T
Q  162 a-gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgt 236  Q
    | |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  16132600 atgtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaacatagattctcatttgt 16132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 15964154 - 15964309
Alignment:
Q  88 caatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttat 186  Q
    |||||||| ||||||||||||||||||  ||||||||||| ||||||| || ||||||||||||| |    ||||| |||||||||||||  ||||| ||    
T  15964154 caatcattaagcatttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacatttgtcc---ataagatgtgtcattatatacttactgat 15964250  T
Q  187 tgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
      ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  15964251 atcaattgtgtccctgattaaatcaaaattaaacatagattcacatttgtgcactaaga 15964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 31805063 - 31804923
Alignment:
Q  103 tgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctg 202  Q
    ||||||||||||  ||| ||||| | |||||||||| |||||||||||||||   || |  | ||||||||||| ||||||| ||| ||||||||| |||    
T  31805063 tgtgtatttaatctatgccacgttagattatatggtgtattgcacatttgccgataaca--tatgtcattatatctttacttcttgaaattgtgtcactg 31804966  T
Q  203 attaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  31804965 attaaatcaaaattaaacatagattctcatttatgcactaaga 31804923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 25943238 - 25943407
Alignment:
Q  74 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcatta 173  Q
    |||||||||||| ||||| |||||||||| || ||||||||  | ||||||||| |||||||||| |||||||| |||||    |||  | ||| |||||    
T  25943238 tgaagttaaatgatcaattattgagcattagtttatttaatcgacgtcacgtcagattatatggtgtattgcacgtttgctgataat--gcgtgccatta 25943335  T
Q  174 tatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||| |||| |||||| |||| |||   ||||||||||||| ||||||||||||||||||||||||| |||||    
T  25943336 tatctttatttattgtaattttgtttttgattaaatcaaaattaaacatagattctcatttgtgcaataaga 25943407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 421441 - 421579
Alignment:
Q  82 aatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatattttta 181  Q
    |||| ||||||||||| ||||||||||||||||  |||||| |||| ||||||  |||||||||||||||  | || |  | |||  |||||||| ||||    
T  421441 aatgatcaatcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacattt-acttatacga-tgttccattatatcttta 421538  T
Q  182 cttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    || ||||||||||||||| ||||||||||||| ||||||||    
T  421539 ctaattgcaattgtgtccttgattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 21263957 - 21263907
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21263957 tatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 2344437 - 2344368
Alignment:
Q  255 catgaatcaatctggtaacctaccc-cagagggagtgttgtgaacccgaaaaacccttctgcttgttcttc 324  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||| ||||||    
T  2344437 catgaatcaatctggtaacctacccgcggagcgagtattgtgaacccg-aaaacccttctgcttcttcttc 2344368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 28012123 - 28012185
Alignment:
Q  91 tcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc 153  Q
    |||||||| ||||||||||||||| |||||||| | | |||||||||| ||||||||||||||    
T  28012123 tcattgagtatttgtgtatttaatgcatgtcacattaaattatatggtgtattgcacatttgc 28012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 17696012 - 17695870
Alignment:
Q  83 atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaa---taagtgtgtcattatattt 178  Q
    |||||||||||||||  |||| ||||||||||||||  ||||||| || |||||||  |||| | |||||  |||||    || |||||||||||||  |    
T  17696012 atggtcaatcattgaatatttatgtatttaattcataccacgtcagatcatatggtgcattgtatatttgttcataaggtgtaggtgtgtcattataact 17695913  T
Q  179 ttacttattgcaattgtgtccctgattaaatcaaagttaaaca 221  Q
    |||||||||| ||||| |||  ||||||||||||| |||||||    
T  17695912 ttacttattgtaattgagtctttgattaaatcaaaattaaaca 17695870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 10182174 - 10182139
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaa 83  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10182174 tgaagtcatgaaaatgacttttttggtgaagttaaa 10182139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 2959758 - 2959792
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||||||||| ||||||||||||    
T  2959758 tgaagtcatgaaaatgacttttctgatgaagttaa 2959792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 82
Target Start/End: Complemental strand, 9903215 - 9903186
Alignment:
Q  53 tcatgaaaatgacttttttgatgaagttaa 82  Q
    ||||||||||||||||||||||||||||||    
T  9903215 tcatgaaaatgacttttttgatgaagttaa 9903186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 23402404 - 23402211
Alignment:
Q  49 gaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcaca 148  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||    
T  23402404 gaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaattcatgtcacgtcatattatatggtgtattgcgca 23402305  T
Q  149 tttg-ccataa-ataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||| |||||| |||    ||||||||||| |||||||||| |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  23402304 tttgtccataagata----tgtcattatatatttacttatttcaattgtgtccctgattaaatcaaa-ataaacattgattctcatttgtgcactaaga 23402211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 22955346 - 22955151
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||| |||| |||||||||| || |||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  22955346 tgaagtaatgagaatgacttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaatccatgtcacgtcaaattatatggtgtattgcac 22955247  T
Q  148 atttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||| ||||   | || ||||||| ||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  22955246 atttgctcata---aggtatgtcattgtatctttacttattgcaattgtgtcccttattaaatcaacattaaacatagattctcatttgtgcactaaga 22955151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 7742933 - 7743119
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||  ||||||||| | |||||||||| ||||| ||    
T  7742933 tgaagtcataaaaatgacttttttgatgaagtaaaatgatcaatcattgagtatttgtgtatttaatctatgtcacgttagattatatggtgtattgtac 7743032  T
Q  148 atttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgt 236  Q
    ||||| |||||   | | |||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  7743033 atttgtccata---aggcgtgtcattatatctttacttattgcaattgtgcccctgattaaattaaaattaaacatagattctcatttgt 7743119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 37854326 - 37854135
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacat 149  Q
    ||||||||| |||||||||| || |||| ||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaatccatgtcacgtcacattatatggtgtattgcacat 37854227  T
Q  150 ttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||| ||||   | || |||  |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  37854226 ttgctcata---aggtatgt--ttatatctttactgattgcaattgtgtccctgattaaatcaaaattaaacatagattttcatttgtacactaaga 37854135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 52 - 245
Target Start/End: Original strand, 5781536 - 5781725
Alignment:
Q  52 gtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacattt 151  Q
    ||||||||||||| |||| || | |||||||||| ||||||||| |  ||||||||||||||| |||||||||||||  |||||||| ||||||| ||||    
T  5781536 gtcatgaaaatgatttttctggtaaagttaaatgatcaatcattaaatatttgtgtatttaatccatgtcacgtcat--tatatggtgtattgcatattt 5781633  T
Q  152 g-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    | |||||||    ||||||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  5781634 gaccataaaa---tgtgtcattatatctttatttattgcaattgtgtccttgattaaatcaaaattaaacatagattctcatttgtgcactaaga 5781725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 4618787 - 4618594
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacat 149  Q
    ||||||||||||||| ||||||| | ||||||||||   ||||||||| ||||||||||||||||||||||| | ||| |||||||||| ||||||||||    
T  4618787 aagtcatgaaaatgatttttttggtaaagttaaatgactaatcattgaacatttgtgtatttaattcatgtcgcttcaaattatatggtgtattgcacat 4618688  T
Q  150 ttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||  ||||   || ||||||||||||| |||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4618687 ttgttcata---aaatgtgtcattatatatttatttattgcaattgtatacctcattaaatcaaaattaaacatagattctcatttgtgcaccaaga 4618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 49002240 - 49002433
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgca 146  Q
    |||||||||||| ||||| |||||| ||||||| |||||  ||||||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||||    
T  49002240 atgaagtcatgataatgattttttt-atgaagtgaaatgaacaatcattgagtatttgtgtatttaatccataccatatcagattatatggtgtattgca 49002338  T
Q  147 catttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||| || |   |||| |||||||||||| ||||||||||||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||    
T  49002339 cattttccct---taag-gtgtcattatatctttacttattgcaattgtgtgtctgattaaatcaaaattaaacatagattcccatttgtgcactaaga 49002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 8133595 - 8133398
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaa--tggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgc 145  Q
    ||||||||| | ||| ||||||||| ||||||||||  || ||||||||| ||||||||||||||||||||| | ||||||| |||||||||| ||||||    
T  8133595 tgaagtcataagaataacttttttggtgaagttaaaaatgatcaatcattaagcatttgtgtatttaattcaagacacgtcagattatatggtgtattgc 8133496  T
Q  146 acatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    || |||||  | |  | || |||||||||||  |||||||||||||||| |||||| ||||||||||| |||||| |||||||| ||||||||| |||||    
T  8133495 acgtttgc--ttataaggtctgtcattatatcattacttattgcaattgcgtccctaattaaatcaaaattaaacgtagattcttatttgtgcagtaaga 8133398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 19786343 - 19786470
Alignment:
Q  93 attgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaat 192  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||| |   |  | |||||||||||||| |||||||||||||||    
T  19786343 attgagcatttgtgtatttaattcatgccacgtcatattatatgatgcattgcacatttgtctgta--aggtgtgtcattatatctttacttattgcaat 19786440  T
Q  193 tgtgtccctgattaaatcaaagttaaacat 222  Q
    || |||| ||||||||||||| ||||||||    
T  19786441 tgagtccttgattaaatcaaaattaaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 4902354 - 4902460
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||| | ||||||| |||| ||||||| ||||| ||||||||||| |||||||||| |||||||||||| |||||||||| ||| ||||    
T  4902354 tgaagtcatgaaaataatttttttggtgaatttaaatgatcaattattgagcatttatgtatttaatccatgtcacgtcagattatatggtgtatagcac 4902453  T
Q  148 atttgcc 154  Q
    |||||||    
T  4902454 atttgcc 4902460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 40382016 - 40382098
Alignment:
Q  164 tgtgtcattatatttttacttattgcaatt-gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||||||||| |||||||||| ||||| |||||||| ||||||| ||| ||||||||||||| |||||||||||||||||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaaga 40382098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 4902465 - 4902535
Alignment:
Q  181 acttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaagagagaaa 251  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||||| |||||    
T  4902465 acttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaa 4902535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 31520896 - 31520861
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||||||||||||| |||||||||    
T  31520896 atgaagtcatgaaaatgacttttttggtgaagttaa 31520861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 8758426 - 8758476
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||||||||  | ||||||||| ||| ||||||||    
T  8758426 tatatttttacttattgcaattgtgctcttgattaaattaaaattaaacat 8758476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 46481249 - 46481217
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagtt 80  Q
    ||||||||||||||||||||||||| |||||||    
T  46481249 tgaagtcatgaaaatgacttttttggtgaagtt 46481217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 4108946 - 4108755
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||||||||||||| | ||||||||||  ||||||||||  |||||||||||||||| ||| ||||||||  |||||||| ||||||||    
T  4108946 tgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaattaatgccacgtcat--tatatggtgtattgcac 4108849  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    |||||||    ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4108848 atttgccc---ataaggtgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaa 4108755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 3038462 - 3038615
Alignment:
Q  90 atcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattg 188  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||  || |||||||||| || ||||||    |||||||||||||| |||||||||||    
T  3038462 atcattgagcatttgtctatttaatttatgtcacgtcagattatacagtgtattgcacatctgtccataag---gtgtgtcattatatctttacttattg 3038558  T
Q  189 caattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  3038559 caattgtgtccctgattaaatcaaaattaaacttagattcccatttatgcactaaga 3038615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 7290734 - 7290928
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||||||| |||||| |||| || ||| |||||||||| ||||||||| ||||||||  ||||||||||||||||||| |||||||||  ||||  ||    
T  7290734 tgaagtcatgcaaatga-ttttctggtgacgttaaatggtgaatcattgatcatttgtgcgtttaattcatgtcacgtcagattatatggcgtattagac 7290832  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||| ||    ||||| ||| | ||||||| |||||||||||||||||| | ||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  7290833 attttccc---ataagatgtattattatatctttacttattgcaattgtattcctgattaaatcaaaattagacatagattttcatttgtgcactaaga 7290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 23176690 - 23176625
Alignment:
Q  180 tacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23176690 tacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaga 23176625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 76 - 245
Target Start/End: Complemental strand, 6267508 - 6267344
Alignment:
Q  76 aagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattat 174  Q
    ||||||||||||||| |   ||| |||||||||||||| ||||| |||||||  |||| |||| ||||  ||||||   ||  ||||| ||||| |||||    
T  6267508 aagttaaatggtcaacc---gagtatttgtgtatttaagtcatgccacgtcaggttatttggtgtattatacattt---atctataaggtgtgttattat 6267415  T
Q  175 atttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    || |||||||||||||||| ||||| ||||||||||||| |||||||||||||  ||||||||||||||||    
T  6267414 atctttacttattgcaattatgtccttgattaaatcaaaattaaacatagatttgcatttgtgcactaaga 6267344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 23176797 - 23176701
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgca 146  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||||| ||||| |||||||||||  |||||||||| |||||||    
T  23176797 tgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgtacttaatgcatgtcacgtc--attatatggtgtattgca 23176701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 18756685 - 18756506
Alignment:
Q  55 atgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc 154  Q
    |||||||| | ||||||  |||||||||||||| ||||||||||        |||||||| |||| ||||||| |||||||||| ||||||||||||| |    
T  18756685 atgaaaattatttttttactgaagttaaatggttaatcattgag--------tatttaatccatg-cacgtcaaattatatggtctattgcacatttgtc 18756595  T
Q  155 ataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
        ||||| ||||||||||||| |||||||||||||||||||||| ||||| ||| |||  ||| |||| |||| | ||||||||||||||    
T  18756594 t---ataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaagtaagcatatattcccctttgtgcactaaga 18756506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 8151443 - 8151371
Alignment:
Q  51 agtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 123  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||| ||||||| ||||||||    
T  8151443 agtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgcatttaatccatgtcac 8151371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 35735973 - 35735844
Alignment:
Q  89 aatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttatt 187  Q
    ||||||||||||||||||||||||||   |||| ||| | |||||||||| |||||||||||||| ||||   | ||||| || ||||| ||||| ||||    
T  35735973 aatcattgagcatttgtgtatttaatgtgtgtcccgttaaattatatggtgtattgcacatttgctcata---aggtgtgccactatatctttacctatt 35735877  T
Q  188 gcaattgtgtccctgattaaatcaaagttaaaca 221  Q
     ||||||||| ||||||||||| ||| |||||||    
T  35735876 acaattgtgt-cctgattaaataaaaattaaaca 35735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 1879138 - 1879088
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  1879138 tatatttttacttattgcaaatgtgtccttgattaaatcaaaattaaacat 1879088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 1835297 - 1835247
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||||| |||| ||||||| ||||||||||||| ||||||||    
T  1835297 tatatttttacttatcgcaaatgtgtccttgattaaatcaaaattaaacat 1835247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 30381034 - 30380955
Alignment:
Q  164 tgtgtcattatatttttacttattgcaattgtgtccctgattaa--atcaaagttaaacatagattctcatttgtgcact 241  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||  || ||| |||| |||||||||| |||| ||||||    
T  30381034 tgtgtcattatatctttacttattataattgtgcccctgattaaatataaaaattaagcatagattcttatttatgcact 30380955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 28220987 - 28220940
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattga 97  Q
    |||||||||||||||||||| || ||||||||||||  ||||||||||    
T  28220987 aagtcatgaaaatgacttttctggtgaagttaaatgaccaatcattga 28220940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 34894980 - 34895014
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    |||||||||||||||||||||| ||||||||||||    
T  34894980 tgaagtcatgaaaatgacttttctgatgaagttaa 34895014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 24849 - 24657
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacat 149  Q
    |||| |||| ||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||    
T  24849 aagttatgagaatgatttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcat 24750  T
Q  150 ttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||| |||||   | || ||| ||||||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  24749 ttgcccata---aggtatgttattatatatttacttattccaattgtgtccctgattaaatcaaa-ataaacatagattctcatttgtgcactaaga 24657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 19631763 - 19631958
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||| | |||||||||| || ||||||||||||  |||||||||| |||||||||||||||| |||||||||| | |||||||||| ||||||||    
T  19631763 tgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtcacgttagattatatggtgtattgcac 19631862  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||| || | | |||| ||||||||| ||||||||||||||| ||||| |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  19631863 atttgcc-tata-aggtgtttcattatatctttacttattgcaatcgtgtctctgattaaatcaaaattaaaaataaattctcatttgtgcactaaga 19631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 26301957 - 26301764
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||| ||||||| ||||||  ||||||||||||  ||||||||||  |||| ||||||||||||||||||||||||  |||||| | |||||||     
T  26301957 tgaagtcataaaaatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaattcatgtcacgtcat--tatatgatgtattgcat 26301860  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||   ||  ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  26301859 attt---atccataagatgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgtactaaga 26301764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 11084186 - 11083993
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||||||| |||||| || | ||||||||||  ||||||||||  |||| |||||||||| |||||||||||||  |||||||| |||| |||    
T  11084186 tgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaatccatgtcacgtcat--tatatggtgtattacac 11084089  T
Q  148 atttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||||    ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||    
T  11084088 atttgccc---ataaggtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaacatagattctcatttgttcattaaga 11083993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 34993907 - 34994040
Alignment:
Q  110 ttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaa 208  Q
    |||||||||||||| ||| |||||||||| ||||||||||||| ||||||    || ||| ||||||| |||||||||| ||||||||||| ||||||||    
T  34993907 ttaattcatgtcacatcagattatatggtgtattgcacatttgtccataat---gtatgttattatatctttacttattacaattgtgtccttgattaaa 34994003  T
Q  209 tcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  34994004 tcaaaattaaacatagattctcatttatgcactaaga 34994040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 30341152 - 30341233
Alignment:
Q  164 tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||||||||| || ||||||||||||||||| | ||||||||||||| ||||| |||||||| |||| |||||||||||    
T  30341152 tgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattagtgcactaaga 30341233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 4102948 - 4102864
Alignment:
Q  60 aatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattg 144  Q
    ||||| ||||||| ||||||||||||   ||||||||| ||||||||||||||||  ||| ||| |||||||||||||| |||||    
T  4102948 aatgatttttttggtgaagttaaatgtctaatcattgaacatttgtgtatttaatctatgccacatcatattatatggtgtattg 4102864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 25441098 - 25441148
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  25441098 tatatttttacttattgcaattgtgtccttgattaaattaaaattaaacat 25441148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 30338489 - 30338564
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtca 122  Q
    |||||||  ||| ||||||||||||  |||||||||||| | ||||||||||||||| || ||||||| |||||||    
T  30338489 atgaagttgtgagaatgacttttttagtgaagttaaatgattaatcattgagcatttatgcatttaatccatgtca 30338564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 4488494 - 4488444
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  4488494 tatatttttacttgttgcaattgtgttcttgattaaatcaaaattaaacat 4488444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 4103038 - 4103070
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgt 195  Q
    |||||||||||||||||||||||||||||||||    
T  4103038 gtgtgtcattatatttttacttattgcaattgt 4103070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 3005427 - 3005393
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa 82  Q
    ||||||||||| |||||||||||||||||||||||    
T  3005427 tgaagtcatgagaatgacttttttgatgaagttaa 3005393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 4102980 - 4103010
Alignment:
Q  165 gtgtcattatatttttacttattgcaattgt 195  Q
    |||||||||||||||||||||||||||||||    
T  4102980 gtgtcattatatttttacttattgcaattgt 4103010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 4104183 - 4104225
Alignment:
Q  203 attaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  4104183 attaaatcaaaattaaacataaattcccatttgtgcactaaga 4104225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 54995834 - 54995638
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgca 146  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||||||  |||||| ||||||||| ||||||| ||||  ||||||| | |||||||    
T  54995834 atgaagtcatgataatgacttttttggtgaagttaaatggccaatcattgtacatttgcgtatttaatccatgtcatgtcaggttatatgatgtattgca 54995735  T
Q  147 catttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||| ||||||    ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||    
T  54995734 catttgtccataat---gtgtgtctttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaatatagattcttatttgtgtactaaga 54995638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 1012339 - 1012504
Alignment:
Q  77 agttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattata 175  Q
    ||||||||||| |||||| ||| ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||    ||||| ||||||||||||    
T  1012339 agttaaatggttaatcatcgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacatttgccc---ataaggtgtgtcattata 1012435  T
Q  176 tttttacttattgcaatt-gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 243  Q
    | |||||||||||||||| |||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  1012436 tctttacttattgcaatttgtgtccctgattaaatcaaaattaaacatagattcctatttgtgcactaa 1012504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 2266890 - 2266695
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| |||||||||| |  ||||||||||| ||||||||||||||||||||||||||||| |||| ||||| | |||| ||||| |||| |||    
T  2266890 tgaagtcatgataatgacttttctagtgaagttaaatcgtcaatcattgagcatttgtgtatttaatccatgccacgttagattacatggtgtattacac 2266791  T
Q  148 atttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||| | || | | |||||||||||||| |||||||||||||| | || |  ||||||||||||| |||||||||||||| ||||||||||||||||    
T  2266790 atttgtc-tata-aggtgtgtcattatatctttacttattgcaactatgactttgattaaatcaaaattaaacatagattcccatttgtgcactaaga 2266695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 9743604 - 9743799
Alignment:
Q  50 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcaca- 148  Q
    |||||||| |||||||||||||| |||| |||||||  |||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||     
T  9743604 aagtcatgtaaatgacttttttggtgaaattaaatgaccaattattgaacatttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacat 9743703  T
Q  149 tttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaac--atagattctcatttgtgcactaaga 245  Q
    ||| |||||   |||||| |||||| || |||||||||||||||| ||| | ||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  9743704 ttttccata---aagtgtttcattaaatctttacttattgcaattatgttcttgattaaatcaaaattaaacatatatattctcatttgtgcactaaga 9743799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 17612349 - 17612535
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| ||| | |||| |||    
T  17612349 tgaagtcatgagaatgatttttttaatgaagttaaatggtcaatcattaagcatttgtgta-ttaattcatgtcacgccagattaaatgatgtatttcac 17612447  T
Q  148 atttgccataaataa-gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtg 237  Q
    |||||||   ||||| ||||||||||  || |||||||||||||||| |||||  |||||||||||| |||||||||||||  ||||||||    
T  17612448 atttgcc---aataaggtgtgtcattgcatctttacttattgcaattatgtcctagattaaatcaaaattaaacatagattgccatttgtg 17612535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 2704526 - 2704630
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcac 147  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  2704526 tgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaattcacgtcacgtc--attatatggtgtattgcac 2704623  T
Q  148 atttgcc 154  Q
    |||||||    
T  2704624 atttgcc 2704630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 2708000 - 2708082
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2708000 gtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaaga 2708082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 2570558 - 2570687
Alignment:
Q  114 ttcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaa 213  Q
    |||||||||||||| |||||||||| ||||| | ||||| | || | |||||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  2570558 ttcatgtcacgtcagattatatggtgtattgtatatttggc-tata-aagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaa 2570655  T
Q  214 gttaaacatagattctcatttgtgcactaaga 245  Q
      ||||||||||||  ||||||||||||||||    
T  2570656 agtaaacatagatttccatttgtgcactaaga 2570687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 33036196 - 33036064
Alignment:
Q  87 tcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttat 186  Q
    ||||||||||||||||  |||||||||| ||||| |||| | ||||||| || ||||||||||||||| || | | || ||||||||||| |||||||||    
T  33036196 tcaatcattgagcattc-tgtatttaatccatgttacgttagattatattgtgtattgcacatttgcc-tata-aggtttgtcattatatctttacttat 33036100  T
Q  187 tgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||| ||| |||||||||||||| ||||||||    
T  33036099 tgcaattgagtctctgattaaatcaaaattaaacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 51204593 - 51204702
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||||| |||||||||||| || |||||||||    ||| ||||| ||||||| |||||||||||||| |||||||| ||| ||||||||||  |||    
T  51204593 tgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaatccatgtcacatcagattatatggtgcatt 51204692  T
Q  144 gcacatttgc 153  Q
    ||||||||||    
T  51204693 gcacatttgc 51204702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 20097525 - 20097417
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||||||| |||||||||| || |||||||||    ||| |||||||||  |||||||||||||||||||||| ||||||| ||||||| || ||||    
T  20097525 tgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaattcatgccacgtcagattatatagtgtatt 20097426  T
Q  144 gcacatttg 152  Q
    ||| |||||    
T  20097425 gcatatttg 20097417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 17513126 - 17513008
Alignment:
Q  102 ttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccct 201  Q
    |||||||||||||||||||| ||||| ||||||| || | |||||||| ||| ||| | | |||||||||||||| |||| |||||| ||||| |||  |    
T  17513126 ttgtgtatttaattcatgtcgcgtcagattatatagtgtgttgcacatctgc-atata-atgtgtgtcattatatctttatttattgtaattgagtctat 17513029  T
Q  202 gattaaatcaaagttaaacat 222  Q
     ||||||||||| ||||||||    
T  17513028 aattaaatcaaaattaaacat 17513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 22756924 - 22756794
Alignment:
Q  89 aatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttatt 187  Q
    |||||||||| ||||||||||||||| |||| ||| ||| |||||| ||| |||||||||||||| ||||    || ||| || ||||| ||||||||||    
T  22756924 aatcattgagtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcata---cagcgtgccactatatctttacttatt 22756828  T
Q  188 gcaattgtgtccctgattaaatcaaagttaaacat 222  Q
     |||||| || ||||||| ||||||| ||||||||    
T  22756827 ccaattgcgt-cctgattgaatcaaaattaaacat 22756794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 28293271 - 28293124
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttatt 143  Q
    ||||||||||| ||||||||||| | |||||||||    |||||||||||||||| ||   |||||||||| ||||  || ||| |||||||| | ||||    
T  28293271 tgaagtcatgagaatgactttttcggtgaagttaaccatatggtcaatcattgagtatcaatgtatttaatccatgctacatcaaattatatgatgtatt 28293172  T
Q  144 gcacatttgccataaataag-tgtgtcattatatttttacttattgcaatt 193  Q
    |||||||| ||    ||||| ||||| ||||||| ||||||||||||||||    
T  28293171 gcacatttacc---tataagatgtgttattatatctttacttattgcaatt 28293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 5915707 - 5915657
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  5915707 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 5915657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 5812705 - 5812753
Alignment:
Q  174 tatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  5812705 tatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 5812753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 47236989 - 47237048
Alignment:
Q  163 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    ||||||||||| |||||||||||||||||||| |  |||||||||||| || ||||||||    
T  47236989 gtgtgtcattagatttttacttattgcaattgcgcacctgattaaatcgaaattaaacat 47237048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 37793520 - 37793570
Alignment:
Q  172 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  37793520 tatatttttacttattgcaattgtgtctttgattaaattaaaattaaacat 37793570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 22729777 - 22729896
Alignment:
Q  100 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtc 198  Q
    ||||||||||||||| |||| ||| ||| |||||| ||| |||||||||||||| ||||     ||||| || ||||| || ||||||||||| |||||     
T  22729777 atttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcata---tggtgtgccactatatcttaacttattgcaactgtgt- 22729872  T
Q  199 cctgattaaatcaaagttaaacat 222  Q
    ||||||| ||||||| ||||||||    
T  22729873 cctgattgaatcaaaattaaacat 22729896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 33255513 - 33255570
Alignment:
Q  48 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgt 105  Q
    |||||||| || ||| ||||||||| ||||||||||||| |||| |||||||||||||    
T  33255513 tgaagtcacgagaatcacttttttggtgaagttaaatggccaattattgagcatttgt 33255570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 33255572 - 33255621
Alignment:
Q  168 tcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 219  Q
    |||| |||| ||||||||||||||||||||  || |||||||||||||||||    
T  33255572 tcatcatatctttacttattgcaattgtgt--cttattaaatcaaagttaaa 33255621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 51959922 - 51959989
Alignment:
Q  107 tatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatat 176  Q
    ||||||||  || |||||||| |||||||||| ||||||||||||| |||||   ||||||||||||||||    
T  51959922 tatttaatctatatcacgtcagattatatggtgtattgcacatttgcccata---aagtgtgtcattatat 51959989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 89 - 245
Target Start/End: Original strand, 5645 - 5799
Alignment:
Q  89 aatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattg 188  Q
    |||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||| || | | |||||||||||||| ||| |||||||    
T  5645 aatcattgagcatttgtgtatttaattcatgtcatgttagattatatggtgtattgcacatttgcc-tata-aggtgtgtcattatatatttccttattg 5742  T
Q  189 caattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 245  Q
    ||||| ||||||| ||||||||||| |||||||| ||||| ||||||| || |||||    
T  5743 caattatgtccctcattaaatcaaaattaaacatggattcgcatttgttcattaaga 5799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 9170 - 8993
Alignment:
Q  47 atgaagtcatgaaaatgacttttttgatgaagtta----aatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcatattatatggtttat 142  Q
    ||||||| |||| ||||||||||||| |||||| |    |||| ||||||||||| ||||||||||||||||  |||||| |||| ||||||  ||||||    
T  9170 atgaagttatgagaatgacttttttgctgaagtcatgagaatgatcaatcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacagtttat 9071  T
Q  143 tgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 222  Q
    |||||||||  | || |  | |||  |||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||    
T  9070 tgcacattt-acttatacga-tgttccattatatctttactaattgcaattgtgtccttgattaaatcaaaattaaacat 8993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 12086 - 12031
Alignment:
Q  164 tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 219  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  12086 tgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 15286 times since January 2019
Visitors: 1165