View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_low_1 (Length: 611)
Name: NF1356_low_1
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 8112257 - 8112472
Alignment:
| Q |
29 |
acatttcgatccttgttgctaacactatatacgtgaaccgaatcaaacaattatctttaggatggcaactctattatgattgtatgaattattatttgca |
128 |
Q |
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| T |
8112257 |
acatttcgatccttgttgctaacactatatacgtgaaccgaatcaaacaattatctttaggatggcaactctattatgattgtatga-ttattatttgcg |
8112355 |
T |
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| Q |
129 |
cgtattatgcatttagaaatgattgtgtgaaaacaaaacatgctactaattttgctaacacgatatattcgtctaagaaaatcggttaattcttttgatg |
228 |
Q |
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| T |
8112356 |
tgcattatgcatttagaaatgattgtgtgaaaacaaaacatgctactaattttgctaacacggtatattcgtctaagaaaatcggttaacttttttgatg |
8112455 |
T |
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| Q |
229 |
gattttttatttatcaa |
245 |
Q |
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| T |
8112456 |
gattttttatttatcaa |
8112472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 439 - 600
Target Start/End: Original strand, 8112636 - 8112797
Alignment:
| Q |
439 |
tgtaacttgaaaattttgattgtaagtggacatgcagattgagtttatatgctggaaattgaaaggacaagaattaaggatnnnnnnnnnnnntatgtgc |
538 |
Q |
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| T |
8112636 |
tgtaacttgaaaattttgattgtaagtggacatgcagattgagtttatatgctggaaattgaaaggacaagaattaaggataaaaaacaaaaatatgtgc |
8112735 |
T |
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| Q |
539 |
gtttttgtctgtaacgatgatttagaaatcaagtgccccgcaatggaaactgtcaggttcat |
600 |
Q |
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| T |
8112736 |
gtctttgtctgtaacgatgatttagaaatcaagtgccccgcaatggaaactgtcaggttcat |
8112797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 313 - 427
Target Start/End: Original strand, 8112545 - 8112659
Alignment:
| Q |
313 |
gagtgtggaggggtacaagcaggtagaactagggttaccaagaatacaagaattgaaggaagggaaatatttgttttcttttctttttctatgtaacttg |
412 |
Q |
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| T |
8112545 |
gagtgtggaggggtacaagcaggtagaactagggttaccaagaatacaagaattgaaggaagggaaatatttgttttcttttctttttctatgtaacttg |
8112644 |
T |
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| Q |
413 |
aaaatcttgattgta |
427 |
Q |
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| T |
8112645 |
aaaattttgattgta |
8112659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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