View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_low_13 (Length: 331)
Name: NF1356_low_13
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 120 - 295
Target Start/End: Complemental strand, 55078191 - 55078016
Alignment:
| Q |
120 |
gttaagtctagtacttttaaaaatgtgtggaatatctgagttgttttaccttgcccggccccagatgaggtggagtaaatagatgctaaagcaaacggaa |
219 |
Q |
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| T |
55078191 |
gttaagtctagtacttttaaaaatgtgtggaatatctgagttgttttaccttgcccggccccagatgaggtggagtaaatagatgctaaagcaaacggaa |
55078092 |
T |
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| Q |
220 |
cactgaaattaatctgcataggttattnnnnnnntgttagtttatgatttgcagtgattagtatacgtatgtagct |
295 |
Q |
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| T |
55078091 |
cactgaaattaatctgcataggttattaaaaaaatgttagtttatgatttgcagtgattagtatacgtatgtagct |
55078016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 55078284 - 55078231
Alignment:
| Q |
28 |
aatattgaggactcccaaagataaacctgaaatttttgaagcataattagaaag |
81 |
Q |
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| T |
55078284 |
aatattgaggactcccaaagataaacctgaaatttttgaagcataattagaaag |
55078231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30264481 - 30264449
Alignment:
| Q |
1 |
tccaacaagcaatgctgcttacaccataatatt |
33 |
Q |
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| T |
30264481 |
tccaacaagcaatgctgcttacaccataatatt |
30264449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30287707 - 30287739
Alignment:
| Q |
1 |
tccaacaagcaatgctgcttacaccataatatt |
33 |
Q |
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| T |
30287707 |
tccaacaagcaatgctgcttacaccataatatt |
30287739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 15123493 - 15123571
Alignment:
| Q |
156 |
tgagttgttttaccttgcccggccccagatgaggtggagtaaatagatgctaaagcaaacggaacactgaaattaatct |
234 |
Q |
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| T |
15123493 |
tgagttgctttaccttgccctgcccctgatgagctggagtaaattgatgctagagcaaatgggacactgaaattaatct |
15123571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 15123398 - 15123450
Alignment:
| Q |
28 |
aatattgaggactcccaaagataaacctgaaatttttgaagcataattagaaa |
80 |
Q |
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| T |
15123398 |
aatattgagaactcccaaagataaacctgaaaattttgaagcattattagaaa |
15123450 |
T |
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