View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1356_low_18 (Length: 307)
Name: NF1356_low_18
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 67 - 220
Target Start/End: Original strand, 50411650 - 50411810
Alignment:
| Q |
67 |
gatgaatgaggcgctcaagtttctatcctatttaaggaaaaacaacagtt-------gagttaaatttcacttttatttcctacttttcttttaagggaa |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50411650 |
gatgaatgaggcgctcaagtttctatcctatttaatgaaaaacaacagttttcagctgagttaaatttcacttttatttcctacttttcttttaaggaaa |
50411749 |
T |
|
| Q |
160 |
ttatctacctttttgtgtgtttaattatctgaatataaaataaataaaagacatcaaatcc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50411750 |
ttatctacctttttgcgtgtttaattatctaaatataaaataaataaaagacatcaaatcc |
50411810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 50408749 - 50408892
Alignment:
| Q |
68 |
atgaatgaggcgctcaagtttctatcctatttaaggaaaaacaacagtt-------gagttaaatttcacttttatttcctacttttcttttaagggaat |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408749 |
atgaatgaggcgctcaagtttctatcctatttaatgaaaaacaacagttttcagctgagttaaatttcacttttatttcctacttttcttttaagggaat |
50408848 |
T |
|
| Q |
161 |
tatctacctttttgtgtgtttaattatctgaatataaaataaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408849 |
tatctacctttttgtgtgtttaattatctgaatataaaataaat |
50408892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University