View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_low_19 (Length: 304)
Name: NF1356_low_19
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36993762 - 36993639
Alignment:
| Q |
1 |
acgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacaccta |
100 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36993762 |
acgcagccactaatggtcttatggttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacaccta |
36993663 |
T |
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| Q |
101 |
tgataaaatcaaaaaatcatattc |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
36993662 |
tgataaaatcaaaaaatcatattc |
36993639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 37019202 - 37019079
Alignment:
| Q |
1 |
acgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacaccta |
100 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37019202 |
acgcagccactaatggtcttatggttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacaccta |
37019103 |
T |
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| Q |
101 |
tgataaaatcaaaaaatcatattc |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
37019102 |
tgataaaatcaaaaaatcatattc |
37019079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 36956174 - 36956040
Alignment:
| Q |
1 |
acgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacaccta |
100 |
Q |
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|||||||||| | || ||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
36956174 |
acgcagctacaagcggccttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactccaacaccta |
36956075 |
T |
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| Q |
101 |
tgataaaatcaaaaaatcatattctatcacaatcaat |
137 |
Q |
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| || ||||||||| | |||||| |||||||||||| |
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| T |
36956074 |
taatgaaatcaaaaca--atattcaatcacaatcaat |
36956040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 36939595 - 36939484
Alignment:
| Q |
3 |
gcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatg |
102 |
Q |
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||||| || ||||| |||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
36939595 |
gcagcgaccaatggccttatagtcttaggactctctgaagcacccagagaaattcctattataacggagtgaacaataattcccaactccaatacctatt |
36939496 |
T |
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| Q |
103 |
ataaaatcaaaa |
114 |
Q |
| |
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|| ||||||||| |
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| T |
36939495 |
atgaaatcaaaa |
36939484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 36993649 - 36993612
Alignment:
| Q |
250 |
aaatcatattcatatctcatgcacaaatatctttatat |
287 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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|
| T |
36993649 |
aaatcatattcacatctcatgcacaaatatctttatat |
36993612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 37019089 - 37019052
Alignment:
| Q |
250 |
aaatcatattcatatctcatgcacaaatatctttatat |
287 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
37019089 |
aaatcatattcacatctcatgcacaaatatctttatat |
37019052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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