View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1356_low_21 (Length: 296)

Name: NF1356_low_21
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1356_low_21
NF1356_low_21
[»] chr5 (4 HSPs)
chr5 (94-272)||(4300971-4301153)
chr5 (122-295)||(4294420-4294592)
chr5 (63-93)||(26317829-26317859)
chr5 (36-94)||(22616493-22616551)
[»] chr2 (4 HSPs)
chr2 (4-94)||(34441880-34441970)
chr2 (4-93)||(41713164-41713253)
chr2 (63-99)||(4763622-4763658)
chr2 (4-92)||(42005390-42005478)
[»] chr6 (4 HSPs)
chr6 (4-94)||(11084111-11084201)
chr6 (4-94)||(26301882-26301972)
chr6 (4-94)||(19631748-19631838)
chr6 (63-99)||(1623279-1623315)
[»] chr4 (3 HSPs)
chr4 (10-99)||(2704506-2704595)
chr4 (13-91)||(9743590-9743668)
chr4 (63-95)||(35025769-35025801)
[»] chr3 (2 HSPs)
chr3 (13-93)||(47930634-47930714)
chr3 (10-92)||(19606879-19606961)
[»] chr8 (5 HSPs)
chr8 (12-94)||(4108879-4108961)
chr8 (24-93)||(28220934-28221003)
chr8 (4-87)||(23176722-23176805)
chr8 (4-86)||(8151371-8151453)
chr8 (63-96)||(16447036-16447069)
[»] chr1 (2 HSPs)
chr1 (13-95)||(13876887-13876969)
chr1 (63-95)||(2959742-2959774)
[»] scaffold0008 (1 HSPs)
scaffold0008 (65-97)||(267278-267310)
[»] chr7 (1 HSPs)
chr7 (63-95)||(241039-241071)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 4301153 - 4300971
Alignment:
Q  94 taaaatgattacacaaatcaaaagcacaccactca----aatagttatccaattattgtttttaccataaataacaagtgaggacggtacttgaacagaa 189  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4301153 taaaatcattacacaaatcaaaagcacaccactcattcaaatagttatccaattattgtttttaccataaataacaggtgaggacggtacttgaacagaa 4301054  T
Q  190 ttgttggcagaatttccagcaagaaatgatgggtggctctgagcaaatctgaaagcatagttgttatttttggggttttgaga 272  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  4301053 ttgttggcagaatttctagcaagaaatgatgggtggctctgagcaaatctgaaagcatagttgttatttttgtggtttcgaga 4300971  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 4294592 - 4294420
Alignment:
Q  122 ccactcaaatagttatccaattattgtttttaccataaataacaagtgaggacggtacttgaacagaattgttggcagaatttccagcaagaaatgatgg 221  Q
    |||||||||||| ||||||| |||| |||||||||||||||||| ||| ||| || | ||||| |||||||||||| ||||||  |||||||||||||||    
T  4294592 ccactcaaatagatatccaactatt-tttttaccataaataacaggtgtggatggcatttgaagagaattgttggctgaatttatagcaagaaatgatgg 4294494  T
Q  222 gtggctctgagcaaatctgaaagcatagttgttatttttggggttttgagaatgagaggtagtagtagttcctt 295  Q
    ||  |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  4294493 gttactctgagcaaatctgaaagcatagttgttattgttgtggttttgagaatgagaggtaggagtagttcctt 4294420  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 26317829 - 26317859
Alignment:
Q  63 tcattttcatgacttcatcatagaattttcc 93  Q
    |||||||||||||||||||||||||||||||    
T  26317829 tcattttcatgacttcatcatagaattttcc 26317859  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 22616551 - 22616493
Alignment:
Q  36 attggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 94  Q
    ||||| ||||||||||||||       ||||||||||||||||| ||||||||||||||    
T  22616551 attggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcct 22616493  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 34441880 - 34441970
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 94  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||| |||       ||||||||||||||||| ||||||||||||||    
T  34441880 gtgacatgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcct 34441970  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 41713253 - 41713164
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcc 93  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||| ||||||       |||||||||||| ||||  ||||||||||||    
T  41713253 gtgacatgaattaaatacataaatattcaatgattggtcatttaatttcaccagaaaaatcattttcatgatttcactatagaattttcc 41713164  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 4763658 - 4763622
Alignment:
Q  63 tcattttcatgacttcatcatagaattttcctaaaat 99  Q
    ||||||||||||||||||||||||||||||| |||||    
T  4763658 tcattttcatgacttcatcatagaattttccaaaaat 4763622  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 42005478 - 42005390
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttc 92  Q
    |||| ||| |||||||| | ||||||| |||  ||| |||||||||||||||       ||||||||||||||||| ||||||||||||    
T  42005478 gtgacatggattaaataaacaaatattcaatggttgatcatttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 11084111 - 11084201
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 94  Q
    |||| ||| |||||||||||||||||| ||| |||||||||||||||| |||       | ||||||||||||||| ||||||||||||||    
T  11084111 gtgacatggattaaatacataaatattcaatgattggtcatttaactttaccagaaaagttattttcatgacttcaccatagaattttcct 11084201  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 26301882 - 26301972
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 94  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||||||        ||||||| ||||||||| |||| |||||||||    
T  26301882 gtgacatgaattaaatacataaatattcaatgattggtcatttaacttcacgaaaaaaatcatttttatgacttcaccatataattttcct 26301972  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 19631838 - 19631748
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 94  Q
    |||| ||| |||||||||| |||| || ||| ||||||||||||||||||||       ||||| | ||||||||| ||||||||||||||    
T  19631838 gtgacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcct 19631748  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 1623279 - 1623315
Alignment:
Q  63 tcattttcatgacttcatcatagaattttcctaaaat 99  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1623279 tcattttcatgacttcactatagaattttcctaaaat 1623315  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 2704595 - 2704506
Alignment:
Q  10 tgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcctaaaat 99  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||       ||||||||||||||||| |||| ||||||||| ||||    
T  2704595 tgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgacttcaccataaaattttccttaaat 2704506  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 9743668 - 9743590
Alignment:
Q  13 attaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaatttt 91  Q
    |||||||||| |||| || ||||||||||||||||| ||||||       |||||| |||||||| | |||||||||||    
T  9743668 attaaatacacaaatgttcaataattggtcatttaatttcaccaaaaaagtcatttacatgactttaccatagaatttt 9743590  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 35025769 - 35025801
Alignment:
Q  63 tcattttcatgacttcatcatagaattttccta 95  Q
    ||||||||||||||||| |||||||||||||||    
T  35025769 tcattttcatgacttcagcatagaattttccta 35025801  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 47930634 - 47930714
Alignment:
Q  13 attaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcc 93  Q
    |||||||||| |||| || ||| ||||||||||||||||||||       ||||||||||||||||| |||||||||||||    
T  47930634 attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 19606879 - 19606961
Alignment:
Q  10 tgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttc 92  Q
    ||||||||||||| ||||  | ||| ||||||||||||||||||||       ||||||| || |||||| ||||||||||||    
T  19606879 tgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataacttcaccatagaattttc 19606961  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 4108879 - 4108961
Alignment:
Q  12 aattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 94  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||       ||||||||||||||||| |||| |||||||||    
T  4108879 aattaaatacacaaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatgacttcaccataaaattttcct 4108961  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 28220934 - 28221003
Alignment:
Q  24 aaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcc 93  Q
    ||||||| ||| ||||||||||||||||||||       ||||||||||||||| |||||||||||||||    
T  28220934 aaatattcaatgattggtcatttaacttcaccagaaaagtcattttcatgactttatcatagaattttcc 28221003  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 23176722 - 23176805
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaa 87  Q
    |||| ||| ||||| |||| ||||||| ||| ||||||||||||||||||||       ||||||||||||||||| |||||||    
T  23176722 gtgacatgcattaagtacacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgacttcaccatagaa 23176805  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 8151371 - 8151453
Alignment:
Q  4 gtgagatgaattaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcataga 86  Q
    |||| ||| ||||||| || ||||||| ||| ||||||||||||||||||||       |||||||||||||| || ||||||    
T  8151371 gtgacatggattaaatgcacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgactgcaccataga 8151453  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 16447036 - 16447069
Alignment:
Q  63 tcattttcatgacttcatcatagaattttcctaa 96  Q
    ||||||||||||||||| ||||||||||||||||    
T  16447036 tcattttcatgacttcaccatagaattttcctaa 16447069  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 13876887 - 13876969
Alignment:
Q  13 attaaatacataaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttccta 95  Q
    |||||||||| ||||| | ||| |||| |||||||||||||||       |||||||||| |||||| |||||||||||||||    
T  13876887 attaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcataacttcaccatagaattttccta 13876969  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 2959774 - 2959742
Alignment:
Q  63 tcattttcatgacttcatcatagaattttccta 95  Q
    ||||||||||||||||| |||||||||||||||    
T  2959774 tcattttcatgacttcaccatagaattttccta 2959742  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 267310 - 267278
Alignment:
Q  65 attttcatgacttcatcatagaattttcctaaa 97  Q
    ||||||||||||||| |||||||||||||||||    
T  267310 attttcatgacttcaccatagaattttcctaaa 267278  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 241039 - 241071
Alignment:
Q  63 tcattttcatgacttcatcatagaattttccta 95  Q
    ||||||||||||||||| |||||||||||||||    
T  241039 tcattttcatgacttcaccatagaattttccta 241071  T

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