View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1356_low_29 (Length: 259)

Name: NF1356_low_29
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1356_low_29
NF1356_low_29
[»] chr3 (14 HSPs)
chr3 (1-231)||(27632736-27632966)
chr3 (1-222)||(34517528-34517749)
chr3 (25-219)||(34478020-34478214)
chr3 (1-231)||(34505944-34506155)
chr3 (77-231)||(27617216-27617370)
chr3 (57-195)||(34526708-34526846)
chr3 (39-207)||(34462991-34463159)
chr3 (107-215)||(34474184-34474292)
chr3 (1-59)||(27617159-27617217)
chr3 (152-227)||(34512162-34512237)
chr3 (152-227)||(27626390-27626465)
chr3 (173-216)||(34375681-34375724)
chr3 (1-64)||(34375769-34375832)
chr3 (1-86)||(27626250-27626333)
[»] chr7 (1 HSPs)
chr7 (25-226)||(15741143-15741341)
[»] chr6 (1 HSPs)
chr6 (25-226)||(1575035-1575233)
[»] chr2 (3 HSPs)
chr2 (3-212)||(10533622-10533829)
chr2 (39-212)||(10526843-10527014)
chr2 (175-219)||(10531311-10531355)
[»] scaffold1215 (1 HSPs)
scaffold1215 (3-212)||(807-1014)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27632736 - 27632966
Alignment:
Q  1 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27632736 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaaga 27632835  T
Q  101 ttgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27632836 ttgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagcacaaatctgatataggaacagtgaagcagtcactcagataccaat 27632935  T
Q  201 tttcaattataactaagtacaatacctatgt 231  Q
    |||||||||||||||||||||||||||||||    
T  27632936 tttcaattataactaagtacaatacctatgt 27632966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34517528 - 34517749
Alignment:
Q  1 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517528 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaaga 34517627  T
Q  101 ttgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34517628 ttgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaagacaaatctgatataggaacagtgaagcagtcactcagataccaat 34517727  T
Q  201 tttcaattataactaagtacaa 222  Q
    ||||||||||||||||||||||    
T  34517728 tttcaattataactaagtacaa 34517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 34478020 - 34478214
Alignment:
Q  25 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 124  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||  |||||||||||| | |||  | | |||  ||||||||||||||||||| |||    
T  34478020 gaaactgagctatgttacaattaaagcacataaatcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttg 34478119  T
Q  125 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagta 219  Q
    ||||||||||||||| || ||  |||  ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  34478120 catcctcccctaagctttcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagta 34478214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34505944 - 34506155
Alignment:
Q  1 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaaga 100  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||                   ||||||||||||||| |||||     
T  34505944 ataagaatcaaatacttctacgcagaaactgagctattttacaattaaagcacataaat-------------------accttttgtgagattgggaagc 34506024  T
Q  101 ttgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaat 200  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||||||||||||| ||| |  |||| |||     
T  34506025 ttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgatatcaaa 34506124  T
Q  201 tttcaattataactaagtacaatacctatgt 231  Q
    |||||| |||||  |||||||||||||||||    
T  34506125 tttcaaatataatcaagtacaatacctatgt 34506155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 27617216 - 27617370
Alignment:
Q  77 ataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacag 176  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||||||    
T  27617216 ataccttttgtgagattgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacag 27617315  T
Q  177 tgaagcagtcactcagataccaattttcaattataactaagtacaatacctatgt 231  Q
    ||||||| ||| |  |||| ||| |||||| |||||  |||||||||||||||||    
T  27617316 tgaagcattcatttcgatatcaaatttcaaatataatcaagtacaatacctatgt 27617370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 34526708 - 34526846
Alignment:
Q  57 aatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagga 156  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||| || ||  ||| |||||    
T  34526708 aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacagga 34526807  T
Q  157 caaatctgatataggaacagtgaagcagtcactcagata 195  Q
    ||| |||||||||||||||||| |||||||| |||||||    
T  34526808 caattctgatataggaacagtgtagcagtcattcagata 34526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 207
Target Start/End: Original strand, 34462991 - 34463159
Alignment:
Q  39 ttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaag 138  Q
    |||||||||||||||||| |||||||||||||  |||||||||||| |   |  | ||||| ||||  ||||||   | |||||||| |||||||||||     
T  34462991 ttacaattaaagcacatacatcacaagataagcaacagatacctttggcacggctgggaagcttgaactctgcatatttctgattgcctcctcccctaaa 34463090  T
Q  139 cctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaat 207  Q
      || || |||| |||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||    
T  34463091 ttttcatggcacacaggacaaatctgatatatgaacagtgaagcagtcattcagatatcaaatttcaat 34463159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 34474184 - 34474292
Alignment:
Q  107 tctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaa 206  Q
    ||||||||||||||||| | |||||||| ||   || || |||| ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||| |     
T  34474184 tctgcaccatcctgatttcctcctccccgaaattttcatggcacacaggataaatctgatataggagcagtgaagcagtcattcagatatcaaatttaag 34474283  T
Q  207 ttataacta 215  Q
    |||||||||    
T  34474284 ttataacta 34474292  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27617159 - 27617217
Alignment:
Q  1 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaat 59  Q
    |||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||    
T  27617159 ataagaatcaaatacttctacgcagaaactgagctattttactattaaagcacataaat 27617217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 34512162 - 34512237
Alignment:
Q  152 caggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacct 227  Q
    ||||||| |||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||| |||||||| ||||||    
T  34512162 caggacatatctgatatagggacattgaagcagtcattcaaatatcaaatttcaattatatctaagtactatacct 34512237  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 27626390 - 27626465
Alignment:
Q  152 caggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacct 227  Q
    ||||||| |||||||||||| ||| || |||||||| ||| ||| ||| ||||||||||| |||||||| ||||||    
T  27626390 caggacatatctgatatagggacattgtagcagtcattcaaatatcaaatttcaattatatctaagtactatacct 27626465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 34375724 - 34375681
Alignment:
Q  173 acagtgaagcagtcactcagataccaattttcaattataactaa 216  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||    
T  34375724 acagtaaagcagtcattcagataccaaatttcaattataactaa 34375681  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34375832 - 34375769
Alignment:
Q  1 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaa 64  Q
    |||||||||||||| | | | ||||||||| ||| |||||||||| |||| |||||||||||||    
T  34375832 ataagaatcaaatattccgacgcagaaactgagctattttacaatcaaagaacataaatcacaa 34375769  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27626250 - 27626333
Alignment:
Q  1 ataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttg 86  Q
    ||||||||| |||||| |||  | ||| || ||| ||||||||||||||  |||||||||||||||||||  ||| ||||||||||    
T  27626250 ataagaatccaatactcctacccggaagctgagctattttacaattaaa--acataaatcacaagataagcaacatataccttttg 27626333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 15741341 - 15741143
Alignment:
Q  25 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 124  Q
    |||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| ||||  |||||||||||||||||     
T  15741341 gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta 15741242  T
Q  125 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata 224  Q
    |||||||||||||   |||||  ||| |||||||||||||  |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| |||    
T  15741241 catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata 15741145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 1575035 - 1575233
Alignment:
Q  25 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 124  Q
    |||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| ||||  |||||||||||||||||     
T  1575035 gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta 1575134  T
Q  125 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata 224  Q
    |||||||||||||   |||||  ||| |||||||||||||  |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| |||    
T  1575135 catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata 1575231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 10533622 - 10533829
Alignment:
Q  3 aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt 102  Q
    |||||||| ||||| |||  | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||    
T  10533622 aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt 10533721  T
Q  103 gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt 202  Q
    ||  ||||||||||||||||| ||||||||||||||  |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||    
T  10533722 gaactctgcaccatcctgattacatcctcccctaagtttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt 10533819  T
Q  203 tcaattataa 212  Q
    ||||||||||    
T  10533820 tcaattataa 10533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 10526843 - 10527014
Alignment:
Q  39 ttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaag 138  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||||  ||||||||||||||||| ||||||||| |||     
T  10526843 ttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccttaaa 10526942  T
Q  139 cctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataa 212  Q
      |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||||||||||||    
T  10526943 tttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa 10527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 10531311 - 10531355
Alignment:
Q  175 agtgaagcagtcactcagataccaattttcaattataactaagta 219  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||    
T  10531311 agtgaagcagtcattcagataccgaatttcaattataactaagta 10531355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 807 - 1014
Alignment:
Q  3 aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt 102  Q
    |||||||| ||||| |||  | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||    
T  807 aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt 906  T
Q  103 gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt 202  Q
    ||  ||||||||||||||||| ||||||||| |||   |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||    
T  907 gaactctgcaccatcctgattacatcctcccttaaatttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt 1004  T
Q  203 tcaattataa 212  Q
    ||||||||||    
T  1005 tcaattataa 1014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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