View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1356_low_30 (Length: 254)

Name: NF1356_low_30
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1356_low_30
NF1356_low_30
[»] chr2 (5 HSPs)
chr2 (85-254)||(18366199-18366368)
chr2 (85-191)||(30937075-30937181)
chr2 (30-85)||(30936897-30936952)
chr2 (33-85)||(18366030-18366082)
chr2 (145-179)||(30937174-30937208)
[»] chr1 (2 HSPs)
chr1 (85-254)||(22588407-22588576)
chr1 (33-85)||(22588693-22588745)
[»] chr8 (3 HSPs)
chr8 (96-254)||(15348057-15348215)
chr8 (96-254)||(15437122-15437280)
chr8 (96-254)||(15528426-15528584)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 18366199 - 18366368
Alignment:
Q  85 tagtggctattctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacata 184  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18366199 tagtggctgttctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacata 18366298  T
Q  185 atgtttttaaatggagtagagaatgcaagacccccaatatttacaacttttatttgttattcatgtaaat 254  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18366299 atgtttttaaatggagtggagaatgcaacacccccaatatttacaacttttatttgttattcatgtaaat 18366368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 30937075 - 30937181
Alignment:
Q  85 tagtggctattctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacata 184  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30937075 tagtggctgttctctagtgttgaggtttagagttcctctgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacata 30937174  T
Q  185 atgtttt 191  Q
    |||||||    
T  30937175 atgtttt 30937181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 30936897 - 30936952
Alignment:
Q  30 ggattttctctgttgatggaactgcactctggttcttctttaatttggagtagctt 85  Q
    ||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||    
T  30936897 ggattttctctgttagtggaactgcactctcgttcttctttagtttggagtagctt 30936952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 18366030 - 18366082
Alignment:
Q  33 ttttctctgttgatggaactgcactctggttcttctttaatttggagtagctt 85  Q
    |||||||||||  |||||||| ||||||||||||||||| |||||||||||||    
T  18366030 ttttctctgttagtggaactgtactctggttcttctttagtttggagtagctt 18366082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 30937174 - 30937208
Alignment:
Q  145 aatgttttaagttaagctataattcaatttttagg 179  Q
    |||||||||||||||||||||||||||||||||||    
T  30937174 aatgttttaagttaagctataattcaatttttagg 30937208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 85 - 254
Target Start/End: Complemental strand, 22588576 - 22588407
Alignment:
Q  85 tagtggctattctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacata 184  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22588576 tagtggctgttctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacata 22588477  T
Q  185 atgtttttaaatggagtagagaatgcaagacccccaatatttacaacttttatttgttattcatgtaaat 254  Q
    ||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||    
T  22588476 atgttcttaaatggagtggagaatgcaacacccccaatatttataacttttatttgttattcatataaat 22588407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 22588745 - 22588693
Alignment:
Q  33 ttttctctgttgatggaactgcactctggttcttctttaatttggagtagctt 85  Q
    |||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  22588745 ttttctctgttagtggaactgcactctggttcttctttagtttggagtagctt 22588693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 15348215 - 15348057
Alignment:
Q  96 ctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacataatgtttttaaa 195  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348215 ctctagttttgagatttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacataatgtttttaaa 15348116  T
Q  196 tggagtagagaatgcaagacccccaatatttacaacttttatttgttattcatgtaaat 254  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||    
T  15348115 tggagtggagaatgcaacacccccaatatttataacttttatttgttattcatataaat 15348057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 15437280 - 15437122
Alignment:
Q  96 ctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacataatgtttttaaa 195  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15437280 ctctagttttgagatttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacataatgtttttaaa 15437181  T
Q  196 tggagtagagaatgcaagacccccaatatttacaacttttatttgttattcatgtaaat 254  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||    
T  15437180 tggagtggagaatgcaacacccccaatatttataacttttatttgttattcatataaat 15437122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 15528584 - 15528426
Alignment:
Q  96 ctctagtgttgaggtttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacataatgtttttaaa 195  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15528584 ctctagttttgagatttagagttcctttgctcttgaaccttttagaaacaatgttttaagttaagctataattcaatttttaggacataatgtttttaaa 15528485  T
Q  196 tggagtagagaatgcaagacccccaatatttacaacttttatttgttattcatgtaaat 254  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||    
T  15528484 tggagtggagaatgcaacacccccaatatttataacttttatttgttattcatataaat 15528426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University