View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_low_35 (Length: 251)
Name: NF1356_low_35
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 22588278 - 22588129
Alignment:
| Q |
98 |
aagagtaagtgtttattgtttttcatatctttaactctttaatatatggcattgatgcaattgacggaaaatattctaagtgagtttttagtagaatt-- |
195 |
Q |
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| T |
22588278 |
aagagtaagagcttattgtttttcatatctttaactctttaatatatggcattgatgcaaatgacggaaaatattctaagtgagtttgtagtagaattct |
22588179 |
T |
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| Q |
196 |
-------ctttgatattcattatgtctttaatggaatgatttaggtatct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588178 |
tagaatactttgatattcattatgtctttaatggaatgatttaggtatct |
22588129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 22588342 - 22588267
Alignment:
| Q |
2 |
agtaacatttttgaattatatagcatattgaggtttaatgtcagaaggcataggggtaatattcaagagtaagagc |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588342 |
agtaacatttttgaattatatagcatattgaggtttaatgtcagaaggcataggggtaatattcaagagtaagagc |
22588267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 18366509 - 18366646
Alignment:
| Q |
110 |
ttattgtttttcatatctttaactctttaatatatggcattgatgcaattgacggaaaatattctaagtgagtttttagtagaatt---------ctttg |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
18366509 |
ttattatttttcatatctttaactctttaatatatggcattgatgcaattgacggaaaatattctaagtgagtttgtagtagaattcttagaatactttg |
18366608 |
T |
|
| Q |
201 |
atattcattatgtctttaatggaatgatttaggtatct |
238 |
Q |
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| T |
18366609 |
atattcattatgtctttaattgaatgatttaggtatct |
18366646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18366432 - 18366504
Alignment:
| Q |
1 |
tagtaacatttttgaattatatagcatattgaggtttaatgtcagaaggcataggggtaatattcaagagtaa |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18366432 |
tagtaacatttttgaattatatagcatattgaggtttaatgtcagaaggcataggggtaatattcaagagtaa |
18366504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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