View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1356_low_7 (Length: 402)
Name: NF1356_low_7
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 21271888 - 21272286
Alignment:
| Q |
1 |
aaaattcaaatcgcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataaagctagccagattgatcaagttgtt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21271888 |
aaaattcaaatctcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataaagctggccagattgatcaagttgtt |
21271987 |
T |
|
| Q |
101 |
ctttaattacgagaataatccaggtgccaaaatcccatgttacgt--gaatacgcttgattaggcggccttgttcagaaatattgatcctatgaagatga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21271988 |
ctttaattacgagaataatccaggtgccaaaatcccatgttacgtgagaatacgcttgattaggcggccttgttcagaaatattgatcctatgaagatga |
21272087 |
T |
|
| Q |
199 |
cgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttat-----cacgtggtgctttaattttgaattcatatttgccatattt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21272088 |
cgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttgtcgatgcacgtggtgctttaattttgaattcatatttgccatattt |
21272187 |
T |
|
| Q |
294 |
aaattgatcagcacatgataccttgaaaaattccaaaaggcacttaatcctatcggcagtgatattaagtggttttgttttcaatctaaattgcctttg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21272188 |
aaattgatcagcacatgataccttgaaaaattccaaaaggcacttaatcctatcggcagtgatattaagtggttttgttttcaatctaaattgcctttg |
21272286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University