View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1356_low_8 (Length: 349)
Name: NF1356_low_8
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 19580810 - 19580501
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactccatgggaatgaattgtccacaattaat |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
19580810 |
aatttgataaattagcatggattgcaattaaattaattggaattatggattgaattgacatgaattggaactccatgggaatgaattggccacaattcat |
19580711 |
T |
|
| Q |
130 |
gagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaacataaa |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
19580710 |
gagatatctatcatggctattgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtctagtataggacttttttaaatataaa |
19580611 |
T |
|
| Q |
230 |
catttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaagagttc |
329 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
19580610 |
catttgtaaattatgcagaaattgaagctaagaactgtatctaatatatgacttttttaaacataggtatttgtaaatttagctactttattaagagttc |
19580511 |
T |
|
| Q |
330 |
atggcctttg |
339 |
Q |
| |
|
||||||||| |
|
|
| T |
19580510 |
ctggcctttg |
19580501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 19597204 - 19596896
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactccatgggaatgaattgtccacaattaat |
129 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
19597204 |
aatttgataaattagcatggatttcaattaaattaattggaattctggattgaattgacatgaattggaactccatgggaatgaattggccacaattcat |
19597105 |
T |
|
| Q |
130 |
gagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaacataaa |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
19597104 |
gagatatctatcatggctattgcatgtggataaaaggctagaattatgcagaagttggaa-taagcattgtgtctagtatagggcttttttaaacataaa |
19597006 |
T |
|
| Q |
230 |
catttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaagagttc |
329 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597005 |
catttgtaaattatgcagaaattgaagctaagaactatatctaatataagacttttttaaacataggtatttgtaaatttggctgctttattaagagttc |
19596906 |
T |
|
| Q |
330 |
atggcctttg |
339 |
Q |
| |
|
|| |||||| |
|
|
| T |
19596905 |
ctgacctttg |
19596896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 41385050 - 41384741
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactccatgggaatgaattgtccacaattaat |
129 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
41385050 |
aatttgataaattagcatggatttcaattaaattaattggaattctggattgaattgacatgaattggaactccatgggaatgaattggccacaattcat |
41384951 |
T |
|
| Q |
130 |
gagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaacataaa |
229 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41384950 |
gagatatctatcttggctattgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtctagtataggacttttttaaacataaa |
41384851 |
T |
|
| Q |
230 |
catttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaagagttc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41384850 |
tatttgtaaattatgcagaagttgaagctaagaactgtatctaatatgagacttttttaaatataggtatttgtaaatttggctgttttattaagagttc |
41384751 |
T |
|
| Q |
330 |
atggcctttg |
339 |
Q |
| |
|
||||||||| |
|
|
| T |
41384750 |
ctggcctttg |
41384741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 41592346 - 41592660
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactc-----catgggaatgaattgtccacaa |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
41592346 |
aatttgataaattagcatggattgcaattaaattaattggaattctggattgaattgacatgaattggaagtcactttcatgggaatgaattggccacaa |
41592445 |
T |
|
| Q |
125 |
ttaatgagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaac |
224 |
Q |
| |
|
|| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
41592446 |
ttcatgagatatctatcatggctaatgcatatggacaaaaggctagaattatgcagaagttggaactaagcattgtgtctagtatatgacttttttaaac |
41592545 |
T |
|
| Q |
225 |
ataaacatttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaag |
324 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
41592546 |
ataaacatttgtacgttatgcagaagttgatgctaagcactgtatctaatatatgacttttttaaacataggcatttgtaaatttggttgctttattaag |
41592645 |
T |
|
| Q |
325 |
agttcatggcctttg |
339 |
Q |
| |
|
|||| | ||||||| |
|
|
| T |
41592646 |
cgttcctagcctttg |
41592660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 42828150 - 42828457
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactccatgggaatgaattgtccacaattaat |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| || |
|
|
| T |
42828150 |
aatttgataaattagcatggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactccacgggaataaattggccacaattcat |
42828249 |
T |
|
| Q |
130 |
gagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaacataaa |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
42828250 |
gagatatctatcatggctattgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtctagtataggacttttttaaac--aaa |
42828347 |
T |
|
| Q |
230 |
catttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaagagttc |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
42828348 |
catttgtaaattatacagaagttgaagctaagaacagtatctaatataggacttttttaaacataagtatttgtaaatttggctgttttattaagagttc |
42828447 |
T |
|
| Q |
330 |
atggcctttg |
339 |
Q |
| |
|
||||||||| |
|
|
| T |
42828448 |
ctggcctttg |
42828457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 40128158 - 40127854
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactc-----catgggaatgaattgtccacaa |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
40128158 |
aatttgataaattagcatggattgcaattaaattaattggaattctggattgaattgacatgaattggaagtcactttcatgggaatgaattggccacaa |
40128059 |
T |
|
| Q |
125 |
ttaatgagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaac |
224 |
Q |
| |
|
|| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
40128058 |
ttcatgagatatctatcatggctaatgcatatggacaaaaggctagaattatgcagaagttggaactaagcattgtgtctagtatatgacttttttaaac |
40127959 |
T |
|
| Q |
225 |
ataaacatttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaag |
324 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
40127958 |
ataaacatttgtacattatgcagaagttgaagctaagcactgtatctaatatatgacttttttaaacataggcatttgtaaatttggatgctttattaag |
40127859 |
T |
|
| Q |
325 |
agttc |
329 |
Q |
| |
|
|||| |
|
|
| T |
40127858 |
cgttc |
40127854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 329
Target Start/End: Original strand, 43517213 - 43517517
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactc-----catgggaatgaattgtccacaa |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||| |
|
|
| T |
43517213 |
aatttgataaattagcatggattgcaattaaattaattagaattctggattgaattgacatgaatttgaagtcaccttcatgggaatgaattggccacaa |
43517312 |
T |
|
| Q |
125 |
ttaatgagatatctatcatggctgttgcatgtggataaaaggctagaattatgcagaagttggaactaagcattgtgtccagtataggacttttttaaac |
224 |
Q |
| |
|
|| ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
43517313 |
ttcatgagatatctatcatgactaatgcatatggccaaaaggctagaattatgcagaagttgaaactaagcattgtgtctagtatatgacttttttaaac |
43517412 |
T |
|
| Q |
225 |
ataaacatttgtaaattatgcagaagttgaagctaagaactgtatctaatataggacttttttaaacataggtatttgtaaatttggctgctttattaag |
324 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43517413 |
ataaacatttgtacattatgcagaagttgaagctaagcactgtatctaatatatgacttttttaaacataggcatttgtaaatttggctgctttattaag |
43517512 |
T |
|
| Q |
325 |
agttc |
329 |
Q |
| |
|
|||| |
|
|
| T |
43517513 |
cgttc |
43517517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 31200376 - 31200498
Alignment:
| Q |
30 |
aatttgataaattagcctggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactc-----catgggaatgaattgtccacaa |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31200376 |
aatttgataaattagcatggattgcaattaaattaattgaaattctggattgaattgacatgaattggaactcaccttcatgggaatgaattgtccacaa |
31200475 |
T |
|
| Q |
125 |
ttaatgagatatctatcatggct |
147 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
31200476 |
ttcataagatatctatcatggct |
31200498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University