View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1356_low_9 (Length: 345)
Name: NF1356_low_9
Description: NF1356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1356_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 66 - 337
Target Start/End: Complemental strand, 27632693 - 27632422
Alignment:
| Q |
66 |
acataggggatttggaaccctcggagaaacggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaac |
165 |
Q |
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| T |
27632693 |
acataggggatttggaaccctcggagaaacggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaac |
27632594 |
T |
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| Q |
166 |
cagtgcctgattcaatttcgccagcgtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctc |
265 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27632593 |
cagtgcctgattcaattttgccagcgtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctc |
27632494 |
T |
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| Q |
266 |
agatgttgtcattgcagaagacacatccattccaaaaaggtatgatcctttgcagtctatactcttcatctc |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27632493 |
agatgttgtcattgcagaagacacatccattccaaaaaggtatgatcctttgcagtctatactcttcgtctc |
27632422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 66 - 326
Target Start/End: Complemental strand, 34517485 - 34517225
Alignment:
| Q |
66 |
acataggggatttggaaccctcggagaaacggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaac |
165 |
Q |
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| T |
34517485 |
acataggggatttggaaccctcggagaaacggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaac |
34517386 |
T |
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| Q |
166 |
cagtgcctgattcaatttcgccagcgtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctc |
265 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34517385 |
cagtgcctgattcaattttgccagcgtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctc |
34517286 |
T |
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| Q |
266 |
agatgttgtcattgcagaagacacatccattccaaaaaggtatgatcctttgcagtctata |
326 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34517285 |
agatgttgtcattgcagaagacacatccattgcaaaaaggtatgatcctttgcagtctata |
34517225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 100 - 326
Target Start/End: Complemental strand, 34505864 - 34505638
Alignment:
| Q |
100 |
tctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctaggga |
199 |
Q |
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|||||||| ||||||||| ||||||| | |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |||| || ||| |
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| T |
34505864 |
tctcacatattcattgggcattgcatcataagaaagatgcttcctgggaacacaacaaacacgaaccaatgcctgattcaatttcgcctgcgtttatgga |
34505765 |
T |
|
| Q |
200 |
caatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctcagatgttgtcattgcagaagacacatccattcca |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||| | | |||||||||||| || |
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| T |
34505764 |
caatgtgtatcttccaagcttgaatgatattctctcagatgaagaagatacaatcagaaatgcctcagatgttgtcgttgaaaacgacacatccattgca |
34505665 |
T |
|
| Q |
300 |
aaaaggtatgatcctttgcagtctata |
326 |
Q |
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|||||||||| ||||||| |||||||| |
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| T |
34505664 |
aaaaggtatggtcctttgaagtctata |
34505638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 100 - 326
Target Start/End: Complemental strand, 27617079 - 27616853
Alignment:
| Q |
100 |
tctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctaggga |
199 |
Q |
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|||||||| ||||||| | ||||||| | |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |||| || ||| |
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| T |
27617079 |
tctcacatattcattgagcattgcatcataagaaagatgcttcctgggaacacaacaaacacgaaccaatgcctgattcaatttcgcctgcgtttaagga |
27616980 |
T |
|
| Q |
200 |
caatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctcagatgttgtcattgcagaagacacatccattcca |
299 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||| ||| | |||||||||||||| || |
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| T |
27616979 |
caatgtgtatcttccaagcttgaattatattctctcagatgaagaagatacaatcagaaatgcctcagatgttgtcgttgaaaaagacacatccattgca |
27616880 |
T |
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| Q |
300 |
aaaaggtatgatcctttgcagtctata |
326 |
Q |
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|||||||||| ||||||| |||||||| |
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| T |
27616879 |
aaaaggtatggtcctttgaagtctata |
27616853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 106 - 326
Target Start/End: Complemental strand, 34526630 - 34526410
Alignment:
| Q |
106 |
atgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctagggacaatgt |
205 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||| |||||| ||||| |
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| T |
34526630 |
atgttcattgggaagtgcatggcaagaaagatgcttctagggaacacaacaaacatgaacaaatgcctgattcaatttcgccagcgtttagggagaatgt |
34526531 |
T |
|
| Q |
206 |
gtatcttccaagcttgaatgatatgctctcagatgaagaagataccatcagcaatgcctcagatgttgtcattgcagaagacacatccattccaaaaagg |
305 |
Q |
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|||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||| |||||||| |
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| T |
34526530 |
gtatcttcaaagcttgaattatatactttcagatgaagaagataccatcagcaatgcctcagatgatgtcgttgcaaacgacacatccattgcaaaaagg |
34526431 |
T |
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| Q |
306 |
tatgatcctttgcagtctata |
326 |
Q |
| |
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||| ||||||||| |||||| |
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| T |
34526430 |
tattgtcctttgcattctata |
34526410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 34469414 - 34469305
Alignment:
| Q |
152 |
caacaaacatgaaccagtgcctgattcaatttcgccagcgtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagatacc |
251 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||| | | ||||||| |||||||| || |||||| |||||| | | |||||||||||| ||||| |
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| T |
34469414 |
caacaaacatgaaccaatctctgattcaatttttccaccatttagggacgatgtgtatttttcaagctccaatgattttgtttcagatgaagaaaatacc |
34469315 |
T |
|
| Q |
252 |
atcagcaatg |
261 |
Q |
| |
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| |||||||| |
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| T |
34469314 |
accagcaatg |
34469305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 34487013 - 34486923
Alignment:
| Q |
128 |
caagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctagggacaatgtgtatcttccaagct |
219 |
Q |
| |
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||||||||||||||| |||| | |||||||||||||||| | ||||||||||| |||| | | |||||||||||||||| |||||||| |
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| T |
34487013 |
caagaaagatgcttcttggggaaacaacaaacatgaacca-agtctgattcaattctgccaccatttagggacaatgtgtatgatccaagct |
34486923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 27624499 - 27624432
Alignment:
| Q |
99 |
gtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaacca |
167 |
Q |
| |
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|||||| ||||| |||||| ||| |||| ||||||| |||||||||||||| ||||||||| |||||| |
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| T |
27624499 |
gtctcaaatgttgattgggtattacatg-caagaaatatgcttcctgggaaaacaacaaacaagaacca |
27624432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 24990952 - 24990922
Alignment:
| Q |
6 |
aatttgatagtgcacaatttttaactagtaa |
36 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
24990952 |
aatttgatagtgcacaatttttaactagtaa |
24990922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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