View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357-INSERTION-1 (Length: 363)
Name: NF1357-INSERTION-1
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357-INSERTION-1 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 46959287 - 46958937
Alignment:
| Q |
7 |
actttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtga |
106 |
Q |
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| T |
46959287 |
actttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgtgtgaatcctcccgcttgtttttcaacaagtagtga |
46959188 |
T |
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| Q |
107 |
tttgattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaatgacaatgggatggaatgagtagatgaacccttcatgttaga |
206 |
Q |
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| T |
46959187 |
tttgattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaatgacaatgggatattctgtacagatgaacccttcatgttaga |
46959088 |
T |
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| Q |
207 |
tgttggtttaaggcaattagaagttagttatggattaggtggaagtttgttagattagttaccttggatcactcactatgcaaaggtgtattctacccta |
306 |
Q |
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| T |
46959087 |
tgttggtttaaggcaattagaagttagttat-gattaggtggaagtttgttagattagttaccttggatcactcactatacaaaggtgtattctacccta |
46958989 |
T |
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| Q |
307 |
atttttatcacattcttcattttattaattccaattattattcacctttctctca |
361 |
Q |
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| T |
46958988 |
atttttatcacattcttcattttattaattcca---attattcacctttctctca |
46958937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 44522832 - 44522972
Alignment:
| Q |
7 |
actttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtga |
106 |
Q |
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||||||||| ||||| ||||||||| ||||||||||||||||||||| || || || | ||| | ||||| | || ||||| ||||||||||| |
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| T |
44522832 |
actttggaggaaatacaagatcttattgttggcaagctcatggttctgct------cagggttatgtgtaccctcctgtctgcttttcgacaagtagtga |
44522925 |
T |
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| Q |
107 |
tttgattcgacagaatgtcttgttagagacaaatcctgatattaatt |
153 |
Q |
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||| ||| |||||||||||||||||||| ||||||||| |||||||| |
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| T |
44522926 |
tttaattagacagaatgtcttgttagagccaaatcctgctattaatt |
44522972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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