View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13570_high_1 (Length: 398)
Name: NF13570_high_1
Description: NF13570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13570_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 43742995 - 43742631
Alignment:
| Q |
12 |
tcatcattctctttgtgtgagtaaactccgtactacatcaaatatcttatcattgatgtaaactcttcaaagtactaagttgtagacagactttggaaat |
111 |
Q |
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| T |
43742995 |
tcatcattctctctgtgtgagtaaactctgtacttg------tatcttatcattgatgtaaactcttcaaagtaccaagttgtagacagactttggaaat |
43742902 |
T |
|
| Q |
112 |
gcaacgagacttagttacgcggatctttctaatgagaaatataaggtattgtcatgtagataaagatatatcttagtgtttgtaa-tgattcacattata |
210 |
Q |
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| T |
43742901 |
gcaacgagacttagttacgcggatctttctaatgagaaatataaggtattgtcatgtagataaagatatatcttagtgtttgtaattgattcacattata |
43742802 |
T |
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| Q |
211 |
atggatgaagtcctccaccaccttctctttcactttgcnnnnnnnnctttccaaaacaacaatgatggcgacaaagatctcaactcccttgatgagcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43742801 |
atggatgaagtcctccaccaccttctctttcactttgcaaaaaagactttccaaaacaacaatgatggcgacgaagatctcaactcccttgatgagcttg |
43742702 |
T |
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| Q |
311 |
gagattcctccaccacttcgacgacaacgatgaaggggacaacgactttggcaacttgtccggcttggacc |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43742701 |
gagattcctccaccacttcgacgacaacgatgaaggggacaacgactttggcaacttgtccggcttggacc |
43742631 |
T |
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