View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13571_high_2 (Length: 449)
Name: NF13571_high_2
Description: NF13571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13571_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 32266300 - 32266026
Alignment:
| Q |
18 |
atttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcaagaaagaaagcaaactctgaaggatttt-cttttagcaacaa |
116 |
Q |
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| T |
32266300 |
atttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcgagaaagaaagcaaactctgaaggatttttcttttagcaacaa |
32266201 |
T |
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| Q |
117 |
aaatgaagaaatctatgagaatggtagcaaatgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgtt |
216 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266200 |
aaataaagaaatctatgagaatggtagcaaaagtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgtt |
32266101 |
T |
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| Q |
217 |
gagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
291 |
Q |
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| T |
32266100 |
gagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
32266026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 32265956 - 32265888
Alignment:
| Q |
361 |
tatgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacat |
429 |
Q |
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| T |
32265956 |
tatgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacat |
32265888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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