View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13571_low_1 (Length: 653)
Name: NF13571_low_1
Description: NF13571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13571_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 12 - 628
Target Start/End: Complemental strand, 33648498 - 33647880
Alignment:
| Q |
12 |
ccaagaatatcaactttgttcaacctatcacaaataggtaatctatcatgaataactaaccaattttatcctatgcaatcttcgccataatgaaggtaac |
111 |
Q |
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| T |
33648498 |
ccaataataccaactttgttcaacctatcacaaataggtaatctatcatgaatagctaaccaattttatcctatgtaatcttcgccataatgaaggtaac |
33648399 |
T |
|
| Q |
112 |
taatgatataggttaaaatggggtgtacccaagaaaatgatttcacatatgggaatacatgaaattacaatttgcgattttttggatgcagtattaaaca |
211 |
Q |
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| T |
33648398 |
taatgatatgggttaaaatggggtgtacccaagaaaatgatttcacatatgggaatacatgaaattacaatttgcgatttgttggatgcagtattaaaca |
33648299 |
T |
|
| Q |
212 |
ataacgttaacgacgtttgtaaatcactcctttnnnnnnnnnntgatgtttgtaattaaagtattgttgtatcgtaatttgaatactaatgttgttgtca |
311 |
Q |
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| T |
33648298 |
acaacgttaacgacgtttgtaaatcactcatttaaaaaaaaaatgacgtttgtaattaaaatattgttgtatcgtaatttgaatactaatgttgttgtca |
33648199 |
T |
|
| Q |
312 |
tcgggatatcttaattaaagacacctgctgaaggtcgaagatgttggatnnnnnnncca--atgttgttcagaaaataataattggatagtgacattctt |
409 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33648198 |
tcgggatatcttaattaaagacacccgctgaagttcgaagatgttggataaaaaaaaaataatgttgttcagaaaataataattggatagtgacattctt |
33648099 |
T |
|
| Q |
410 |
ggatcaaatgttcttactaacacacatcaaattggatagctacatgttacaagtattggcaatcatttgtatgatgactgtgcatgttcagaagggtgta |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33648098 |
ggatcaaatgttcttactaacacacatcaaattggatagctacatgttacaagtattggcaatcatttgtatgatgattgtgcatgttcagaagggtgta |
33647999 |
T |
|
| Q |
510 |
caatcatcccgtgtcaacatcttatgcttacatgttacaacaccacctctgtttgggatgacaatgtcgtgcttatccttcaagatggttgtattattcc |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
33647998 |
caatcatcccgtgtcaacatcttatgcttacatgttacaacaccatctctgtttgggatgtcaatgtcatgcttatccttcaagatggttgtattattcc |
33647899 |
T |
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| Q |
610 |
ttgtgatgttagtttgtgt |
628 |
Q |
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|||||||||||||| |||| |
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| T |
33647898 |
ttgtgatgttagttcgtgt |
33647880 |
T |
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