View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13571_low_2 (Length: 479)
Name: NF13571_low_2
Description: NF13571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13571_low_2 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0489 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 22 - 474
Target Start/End: Original strand, 9430 - 9882
Alignment:
| Q |
22 |
gtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattagaggtcttcacacact |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9430 |
gtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattagaggtcttcacacact |
9529 |
T |
|
| Q |
122 |
aaaacagactcaacaacgaacctgacattcagaactagaggttgatcgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacat |
221 |
Q |
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| T |
9530 |
aaaacagactcaacaacgaacctgacattcagaactagaggttgattgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacat |
9629 |
T |
|
| Q |
222 |
gtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgcttta |
321 |
Q |
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| T |
9630 |
gtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgcttta |
9729 |
T |
|
| Q |
322 |
atattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataat |
421 |
Q |
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| T |
9730 |
atattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataat |
9829 |
T |
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| Q |
422 |
cagatttggatgagttaaggccatgatgatcttgtgttgtgctctgtgctcct |
474 |
Q |
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| T |
9830 |
cagatttggatgagttaaggccatgatgatcttgtgttgtgctttgtgctcct |
9882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 22 - 474
Target Start/End: Complemental strand, 11598 - 11146
Alignment:
| Q |
22 |
gtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattagaggtcttcacacact |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11598 |
gtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattagaggtcttcacacact |
11499 |
T |
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| Q |
122 |
aaaacagactcaacaacgaacctgacattcagaactagaggttgatcgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11498 |
aaaacagactcaacaacgaacctgacattcagaactagaggttgattgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacat |
11399 |
T |
|
| Q |
222 |
gtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgcttta |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11398 |
gtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgcttta |
11299 |
T |
|
| Q |
322 |
atattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11298 |
atattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataat |
11199 |
T |
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| Q |
422 |
cagatttggatgagttaaggccatgatgatcttgtgttgtgctctgtgctcct |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11198 |
cagatttggatgagttaaggccatgatgatcttgtgttgtgctttgtgctcct |
11146 |
T |
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