View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13571_low_3 (Length: 449)
Name: NF13571_low_3
Description: NF13571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13571_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 32266300 - 32266026
Alignment:
| Q |
18 |
atttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcaagaaagaaagcaaactctgaaggatttt-cttttagcaacaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32266300 |
atttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcgagaaagaaagcaaactctgaaggatttttcttttagcaacaa |
32266201 |
T |
|
| Q |
117 |
aaatgaagaaatctatgagaatggtagcaaatgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgtt |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266200 |
aaataaagaaatctatgagaatggtagcaaaagtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgtt |
32266101 |
T |
|
| Q |
217 |
gagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266100 |
gagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
32266026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 32265956 - 32265888
Alignment:
| Q |
361 |
tatgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacat |
429 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32265956 |
tatgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacat |
32265888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University