View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13571_low_4 (Length: 442)
Name: NF13571_low_4
Description: NF13571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13571_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 27656607 - 27656189
Alignment:
| Q |
19 |
gatatagctctttgttaatcaagtgacattgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaag |
118 |
Q |
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| T |
27656607 |
gatatagctctttgttaattaagtgacattgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaag |
27656508 |
T |
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| Q |
119 |
gcataacgaaatcagccaatgtacatccattccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaactgtaaata |
218 |
Q |
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| T |
27656507 |
gcataacgaaatcagccaatgtacatccattccatggagagtgatcaattcgaggataagctccaccaccatcatccaccaatatcatcaactgtaaata |
27656408 |
T |
|
| Q |
219 |
tttttagatcgtcaattaatatcgattgtcagataattaaaaatattttattatcattacgactatttctaaagttacacatgtgatttgttatgattta |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||| |
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| T |
27656407 |
ttgttagatcgtcaattaatatcgattgtcagataattaaaaatattttattttcattatgactacttctaaagttacacatatgatttgttatgattta |
27656308 |
T |
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| Q |
319 |
ttgatagcgttaaaagtatcttagaaaagtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctacnnnnnnngtgcttaac |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27656307 |
ttgatagcgttaaaagcatcttagaaaagtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctactttttttgtgcttaat |
27656208 |
T |
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| Q |
419 |
ctcttgctcctttgctact |
437 |
Q |
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| T |
27656207 |
ctcttgctcctttggtact |
27656189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 41309954 - 41310096
Alignment:
| Q |
69 |
tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt |
168 |
Q |
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| T |
41309954 |
tacctttaatgcaagagctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatg |
41310053 |
T |
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| Q |
169 |
tgaggataagctccaccaccatcatccaccaatatcatcaact |
211 |
Q |
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| T |
41310054 |
cgtgaataagctccaccagcatcgtccaccaatatcatcaact |
41310096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 41324645 - 41324762
Alignment:
| Q |
69 |
tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt |
168 |
Q |
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| T |
41324645 |
tacctttaatgcaagggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatg |
41324744 |
T |
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| Q |
169 |
tgaggataagctccacca |
186 |
Q |
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| T |
41324745 |
cgtggataagctccacca |
41324762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
| Q |
353 |
actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc |
399 |
Q |
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| T |
41310313 |
actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc |
41310359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 928791 - 928719
Alignment:
| Q |
91 |
gcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgat |
163 |
Q |
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| T |
928791 |
gcaacaccaacaataaaaaggaaaaatggcataacaaaatctgctattgttaaaccattccatggagaatgat |
928719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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