View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13572_low_1 (Length: 693)
Name: NF13572_low_1
Description: NF13572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13572_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 21140286 - 21140113
Alignment:
| Q |
48 |
ggcaaaaactacttccctctatgtttaggacacaagagggagttaaagtgtaattttcttaatcaaaattnnnnnnngaaggcctttgggatgtatgaat |
147 |
Q |
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| T |
21140286 |
ggcaaaaactcctccgctccatgtttaggacacaagagggagttaa-gtgtaattttcttaatcaaaattaaaaaa-gaaggcctttgggatgtatgaat |
21140189 |
T |
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| Q |
148 |
agtacnnnnnnngtgtaattttttgagtatatagtacaattagtcatatagcaatgatctaattgatacctgaatg |
223 |
Q |
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| T |
21140188 |
agtgcaaaaaaagtgtaattttctgagtatgtagtacaattagtcatatagcaatgatcttattgatacctgaatg |
21140113 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 21140087 - 21140027
Alignment:
| Q |
220 |
aatgtgcatttcttgggtcaaattattcatcatgtgataaatactgaggactaatgtgact |
280 |
Q |
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| T |
21140087 |
aatgtgcatttcttgggtcaaattaatcatcatgcgataaatattgaggactaatgtgact |
21140027 |
T |
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