View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13574_high_2 (Length: 496)
Name: NF13574_high_2
Description: NF13574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13574_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Complemental strand, 12281598 - 12281132
Alignment:
| Q |
13 |
aatatggacccgtaatgtacctaaaaatgggatcacacaacatggttgtagcctcaacaccttcttcagccaaagcatttcttaaaacacttgaccaaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12281598 |
aatatggacccgtaatgtacctaaaaatgggatcacacaacatggttgtagcctcaacgccttcttcagccaaagcatttcttaaaacacttgacctaaa |
12281499 |
T |
|
| Q |
113 |
tttttcaaataggccgccgaacgctggcgcaacacacctagcttatgattcacaagacatggttttcgcggactatggatctaggtggaaattacttaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12281498 |
tttttcaaataggccgccgaacgctggcgcaacacacctagcttatgattcacaagacatggttttcgcggactatggatctaggtggaaattacttaga |
12281399 |
T |
|
| Q |
213 |
aaactaagtaacttacacatgctcggtggaaaggctcttgaagattggtcgaaaattcgaggggacgaaatgggacacatgattcgtacaatgtatgatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12281398 |
aaactaagtaacttacacatgctcggtggaaaggctcttgaagattggtcgaaaattcgaggggacgaaatgggacacatgattcgtacaatgtatgatt |
12281299 |
T |
|
| Q |
313 |
gtagcaagaaagatgaatccattgttgtgtctgagatgttaacgtatgctatggcgaatatgataggtcaagttatattaagtcgtcgtgtgttcgagac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12281298 |
gtagcaagaaagatgaatccattgttgtgtctgagatgttaacgtatgctatggcgaatatgataggtcaagttatattaagtcgtcgtgtgttcgagac |
12281199 |
T |
|
| Q |
413 |
aaaaggttatgaatcgaatgaatttaaggatatggttgttgagctcatgaccactgctggttatttt |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12281198 |
aaaaggttatgaatcgaatgaatttaaggatatggttgttgagctcatgaccactgctggttatttt |
12281132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University