View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13574_high_3 (Length: 429)
Name: NF13574_high_3
Description: NF13574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13574_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 38941795 - 38942173
Alignment:
| Q |
18 |
ttaaaaccctctttaaaaataaatgaagctttaaactaagtaagactttacacggttaaaagagttcagttttcgaagttgtaaaaaggcatggagattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941795 |
ttaaaaccctctttaaaaataaatgaagctttaaaccaagcaagactttacacggttaaaagagttcagttttcgaagttgtaaaaaggcatggagattt |
38941894 |
T |
|
| Q |
118 |
aaactaactaatacagcttcatagattcaaaaaggtcagatacgtaagttcaaaaacttctttaaaatcctattgaaaaagtaacacgattttaacaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
38941895 |
aaactaactaatacagcttcatagattcaaaaaggtcagatatgtaagttcaaaaacttctttaaaatcctattgaaaaagtaacctgcttttaacaaag |
38941994 |
T |
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| Q |
218 |
taatactctaaggtaacctgcttttaagattataaagctttataactcnnnnnnnnggtcagattttaaagttctaaaagctnnnnnnnncttccctaga |
317 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
38941995 |
taatactttaaggtaacatgcttttaagattataaagctttataactcaaaaaaaaaatcagattttaaagttctaaaagct-aaaaaaacttccctaga |
38942093 |
T |
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| Q |
318 |
atgaaagatataagatgaagaaatgagttggtatacctttgtacttttcactgaaaatcttaagctgggaaacaaacacc |
397 |
Q |
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| T |
38942094 |
atgaaagatataagatgaagaaatgagttggtatacctttgtactttttactgaaaatcctaagctgggaaacaaacacc |
38942173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 52019589 - 52019773
Alignment:
| Q |
18 |
ttaaaaccctctttaaaaataaatgaagctttaaactaagtaagactttacacggttaaaagagttcagttttcgaagttgtaaaaaggcatggagattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52019589 |
ttaaaaccctctttaaaaataaatgaagctttaaaccaagcaagactttacacggttaaaagagttcagttttcgaagttgtaaaaaggcatggagattt |
52019688 |
T |
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| Q |
118 |
aaactaactaatacagcttcatagattcaaaaaggtcagatacgtaagttcaaaaacttctttaaaatcctattgaaaaagtaac |
202 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52019689 |
aaactaactaatacagcttcatagattcaaaaggatcagatatgtaagttcaaaaacttctttaaaatcctattgaaaaagtaac |
52019773 |
T |
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