View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13574_high_4 (Length: 360)
Name: NF13574_high_4
Description: NF13574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13574_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 28654491 - 28654831
Alignment:
| Q |
1 |
ctactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaactgtataatcaaggaagcacagccatttcgtggcttcgaaat |
100 |
Q |
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| T |
28654491 |
ctactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaactatataatcaaggaagcacagccatttcgtggcttcgaaat |
28654590 |
T |
|
| Q |
101 |
ctcttccacgattgcatggtcaatgtgagtgtgtgtattacataattaccagaacagttacatcgtttcaaattgaaaaagctaataatgatacatatat |
200 |
Q |
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| T |
28654591 |
ctcttccatgattgcatggtcaatgtgagtgtgtgtattacataattac-acaacagtaacatcgtttcaaattgaaaa-gctaataatgatacatatat |
28654688 |
T |
|
| Q |
201 |
atatgcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggatgagaaatttcaagta |
300 |
Q |
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| T |
28654689 |
atatgcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggatgagaaatttcaagta |
28654788 |
T |
|
| Q |
301 |
tgtgaacaccatcaaagctgctgttgagaaagaatgtcccttg |
343 |
Q |
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| T |
28654789 |
tgtgaacaccatcaaagctgctgttgagaaagaatgtcccttg |
28654831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 28635195 - 28635550
Alignment:
| Q |
1 |
ctactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaactgtataatcaa---ggaagcacagccatttcgtggcttcga |
97 |
Q |
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| T |
28635195 |
ctactactccaacagctgcccaaaagcagaagagataatcaaacaacaagtcactgaactatataaccagcatggaaacacagccatttcctgggttcga |
28635294 |
T |
|
| Q |
98 |
aatctcttccacgattgcatggtcaatgtgagtgtgtgtatt--------acataattaccagaaca--gttacatcgtttcaaattgaaaa--agctaa |
185 |
Q |
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||||||||||| ||||||| ||||| |||||| | ||| ||||||||| || |||| |||| ||||||||||||| | | |||| |
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| T |
28635295 |
aatctcttccatgattgcacagtcaacgtgagtataaatatatatagataacataattaacacaacaaagttatatcgtttcaaattaatcggcaactaa |
28635394 |
T |
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| Q |
186 |
taatgatacatatatatatgcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggat |
285 |
Q |
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||||||| ||||| |||||||||||| ||||||||| | |||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
28635395 |
taatgatg--tatatgtatgcagtcatgtgatgcatccctgcttttagcaacggtgcatggtgtggtatcggagcagacatcggtgagaagttttgggat |
28635492 |
T |
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| Q |
286 |
gagaaatttcaagtatgtgaacaccatcaaagctgctgttgagaaagaatgtcccttg |
343 |
Q |
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| T |
28635493 |
gagaaatttcaagtatgtgaataccatcaaagcagctgtcgagaaagaatgtcccttg |
28635550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 28605243 - 28605378
Alignment:
| Q |
204 |
tgcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggatgagaaatttcaagtatgt |
303 |
Q |
| |
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|||||||||| ||||||||| | ||||| | ||| || ||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |
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| T |
28605243 |
tgcagtcatgtgatgcatccctgcttttggagacggtgcacggcgtggtatcggagcagacagcggagagaagttttgggatgagaaacttcaagtatgt |
28605342 |
T |
|
| Q |
304 |
gaacaccatcaaagctgctgttgagaaagaatgtcc |
339 |
Q |
| |
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|| |||||||||||||||| |||| ||||||||||| |
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| T |
28605343 |
gagcaccatcaaagctgctcttgaaaaagaatgtcc |
28605378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 343
Target Start/End: Original strand, 28663095 - 28663233
Alignment:
| Q |
205 |
gcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggatgagaaatttcaagtatgtg |
304 |
Q |
| |
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||||||||| ||||||||| | ||||||| | || | ||| ||| |||||||| |||||||| | ||||||| |||||| |||| ||||||||||| |
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| T |
28663095 |
gcagtcatgtgatgcatccctgcttttagaatcggtgggcgatgtagtatcggaacagacatcagagagaagttccgggatgcgaaacttcaagtatgta |
28663194 |
T |
|
| Q |
305 |
aacaccatcaaagctgctgttgagaaagaatgtcccttg |
343 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||||||| |
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| T |
28663195 |
aaaaccatcaaagctgctgtggagaaagaatgtcccttg |
28663233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28604817 - 28604949
Alignment:
| Q |
1 |
ctactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaactgtat---aatcaaggaagcacagccatttcgtggcttcga |
97 |
Q |
| |
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||||||||||| |||||||||| ||| |||||||| |||||||| ||||||| |||| ||||| || || |||| |||||| ||||||||| || || |
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| T |
28604817 |
ctactactccaagagctgcccaaaagcagaagagatcatcaagcaacaagtcaatgaattgtataacaagcatggaaacacagcaatttcgtgggttaga |
28604916 |
T |
|
| Q |
98 |
aatctcttccacgattgcatggtcaatgtgagt |
130 |
Q |
| |
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||||||||||| |||||||| ||||| |||||| |
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| T |
28604917 |
aatctcttccatgattgcatagtcaaggtgagt |
28604949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28662885 - 28663017
Alignment:
| Q |
1 |
ctactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaactgtata---atcaaggaagcacagccatttcgtggcttcga |
97 |
Q |
| |
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||||||||||| |||||||||| ||| |||||||| |||||||| |||||| ||||||||||| | || |||| |||||| |||||||| || || |
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| T |
28662885 |
ctactactccaagagctgcccaaaagcagaagagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttaga |
28662984 |
T |
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| Q |
98 |
aatctcttccacgattgcatggtcaatgtgagt |
130 |
Q |
| |
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||||||||||| |||||||| ||| | |||||| |
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| T |
28662985 |
aatctcttccatgattgcatagtcgaggtgagt |
28663017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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