View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13574_high_5 (Length: 256)
Name: NF13574_high_5
Description: NF13574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13574_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 36936244 - 36936028
Alignment:
| Q |
23 |
tgtttaacacctagatctctcctttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36936244 |
tgtttaacacctagatctctcctttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttc |
36936145 |
T |
|
| Q |
123 |
aacttgtcctggtgtttatggtaaaggtgcttaccctggttatgctagtgatttgcttgttgattctactactggtgctagtttcaatgctcatggtgat |
222 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36936144 |
aacttgtcctgatgtttatggtaaaggtgcttaccctggttatgctggtgatttgcttgttggttctactactggtgctagtttcaatgctcatggtgat |
36936045 |
T |
|
| Q |
223 |
aatggaaggaagtatct |
239 |
Q |
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||||||||||||||||| |
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| T |
36936044 |
aatggaaggaagtatct |
36936028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 30272782 - 30272566
Alignment:
| Q |
23 |
tgtttaacacctagatctctcctttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30272782 |
tgtttaacacctagatctctcctttagttggaactgcaacaaaccattttggaaatggatatttttaaggtccttctaaagcacctctcgaagctgcttc |
30272683 |
T |
|
| Q |
123 |
aacttgtcctggtgtttatggtaaaggtgcttaccctggttatgctagtgatttgcttgttgattctactactggtgctagtttcaatgctcatggtgat |
222 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30272682 |
aacttgtcctagtgtttatggtaaaggtgcttaccctggttatgctggtgatttgcttgttgattctattactggtgctagtttcaatgctcatggtgat |
30272583 |
T |
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| Q |
223 |
aatggaaggaagtatct |
239 |
Q |
| |
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||||||||||||||||| |
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| T |
30272582 |
aatggaaggaagtatct |
30272566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 36936523 - 36936477
Alignment:
| Q |
23 |
tgtttaacacctagatctctcctttagttggaactgcaacaaaccct |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36936523 |
tgtttaacacctagatctctcctttagttggaactgcaacaaaccct |
36936477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 3619654 - 3619459
Alignment:
| Q |
23 |
tgtttaacacctagatctctcctttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttc |
122 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3619654 |
tgtttaacacctagatctctcctttagctggaactgcaacaaacccttttggaaatggatatttttaaggtccttctgaagcacctcttgaagctgcttc |
3619555 |
T |
|
| Q |
123 |
aacttgtcctggtgtttatggtaaaggtgcttaccctggttatgctagtgatttgcttgttgattctactactggtgctagtttcaatgctcatgg |
218 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3619554 |
agtttgtcctggtgtttatggtaaaggtgcttaccctggttatgctggtgatttgcttgttgattctactactggtgctagtttcaatgctcatgg |
3619459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 53290053 - 53290008
Alignment:
| Q |
23 |
tgtttaacacctagatctctcctttagttggaactgcaacaaaccc |
68 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53290053 |
tgtttaacacctagatctctcctttagctggaactgcaacaaaccc |
53290008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 33811529 - 33811723
Alignment:
| Q |
45 |
tttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttcaacttgtcctggtgtttatggt |
144 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
33811529 |
tttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagccgcttcagcttgtcctggtgtttatggc |
33811628 |
T |
|
| Q |
145 |
aaaggtgcttaccctggttatgctagtgatttgcttgttgattctactactggtgctagtttcaatgctcatggtgataatggaaggaagtatct |
239 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33811629 |
aaaggtgcttaccctggttatgctggtgatttgcttgttgattctactactggtgctagtttcaatgctcatggtgataatggaagaaagtatct |
33811723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 33828821 - 33828881
Alignment:
| Q |
101 |
aagcacctcttgaagctgcttcaacttgtcctggtgtttatggtaaaggtgcttaccctgg |
161 |
Q |
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|||||||||||||||||||||| |||| |||| || ||||||||||| ||||||||||| |
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| T |
33828821 |
aagcacctcttgaagctgcttcggcttgcactggagtgtatggtaaaggagcttaccctgg |
33828881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 26722070 - 26722193
Alignment:
| Q |
45 |
tttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttcaacttgtcctggtgtttatggt |
144 |
Q |
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|
||||| |||||| | |||||| |||||||| ||||| |||||| |||| ||| |||| ||| | ||||||||||| |||| | |||||||||| | |
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| T |
26722070 |
tttagctggaaccgtaacaaatccttttggtaatggttattttcaaggacctaaagaagctcctttggaagctgcttcggcttgcaccggtgtttatgct |
26722169 |
T |
|
| Q |
145 |
aaaggtgcttaccctggttatgct |
168 |
Q |
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||||| ||||| |||||||||||| |
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| T |
26722170 |
aaaggagcttatcctggttatgct |
26722193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 26991819 - 26991942
Alignment:
| Q |
45 |
tttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttcaacttgtcctggtgtttatggt |
144 |
Q |
| |
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||||| |||||| | |||||| |||||||| ||||| |||||| |||| ||| |||| ||| | ||||||||||| |||| | |||||||||| | |
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| T |
26991819 |
tttagctggaaccgtaacaaatccttttggtaatggttattttcaaggacctaaagaagctcctttggaagctgcttcggcttgcaccggtgtttatgct |
26991918 |
T |
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| Q |
145 |
aaaggtgcttaccctggttatgct |
168 |
Q |
| |
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||||| ||||| |||||||||||| |
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| T |
26991919 |
aaaggagcttatcctggttatgct |
26991942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 27002939 - 27002981
Alignment:
| Q |
195 |
tggtgctagtttcaatgctcatggtgataatggaaggaagtat |
237 |
Q |
| |
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||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
27002939 |
tggtgctagctacaatgctaatggtgataatggaaggaagtat |
27002981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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