View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13574_low_1 (Length: 698)

Name: NF13574_low_1
Description: NF13574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13574_low_1
NF13574_low_1
[»] chr1 (5 HSPs)
chr1 (16-683)||(31322259-31322926)
chr1 (564-675)||(31321268-31321379)
chr1 (570-683)||(34650747-34650860)
chr1 (135-195)||(42563705-42563765)
chr1 (286-335)||(17833437-17833486)
[»] chr5 (5 HSPs)
chr5 (569-678)||(38997568-38997677)
chr5 (577-675)||(28803991-28804088)
chr5 (609-678)||(37497494-37497563)
chr5 (564-683)||(13163559-13163675)
chr5 (570-625)||(28804602-28804657)
[»] chr7 (5 HSPs)
chr7 (571-664)||(3704689-3704782)
chr7 (570-683)||(35711285-35711398)
chr7 (587-672)||(39705007-39705092)
chr7 (635-683)||(3697875-3697923)
chr7 (564-616)||(28099210-28099262)
[»] chr8 (3 HSPs)
chr8 (572-623)||(27823712-27823763)
chr8 (564-683)||(2687392-2687511)
chr8 (640-683)||(27166994-27167037)
[»] chr6 (1 HSPs)
chr6 (571-678)||(28636181-28636291)
[»] chr4 (7 HSPs)
chr4 (588-683)||(8332235-8332330)
chr4 (564-615)||(8331535-8331586)
chr4 (592-672)||(7491617-7491697)
chr4 (592-667)||(36139553-36139628)
chr4 (619-671)||(7492701-7492753)
chr4 (592-672)||(7499666-7499746)
chr4 (619-671)||(7500732-7500784)
[»] chr2 (6 HSPs)
chr2 (575-683)||(12028377-12028484)
chr2 (571-657)||(18160734-18160820)
chr2 (564-649)||(18160636-18160721)
chr2 (571-657)||(18308481-18308567)
chr2 (298-336)||(21612240-21612278)
chr2 (564-649)||(18159720-18159805)
[»] scaffold0015 (1 HSPs)
scaffold0015 (286-335)||(47845-47894)


Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 16 - 683
Target Start/End: Complemental strand, 31322926 - 31322259
Alignment:
Q  16 tatactaatcaaagtagaaatagaccagttcttttataagcttcaaattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322926 tatactaatcaaagtagaaatagaccagttcttttataagctttatattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt 31322827  T
Q  116 caacatataagttttttcattttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcattggaaaatcggtgaggtaca 215  Q
    ||||||||||||| ||||||||||||| ||||||| || |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  31322826 caacatataagttgtttcattttgttactatgttattggtacaaagttttcactgtcgtttaccagtaactaatcttcattggaaaatcggtgaggtata 31322727  T
Q  216 taaggtggattttctcctttcaatcgagttttctccatacgcaagagatgatgattgaacccttaaccagttgctgaaggtgtccaaatcccttatcact 315  Q
    |||||||| || || ||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  31322726 taaggtgggttctcccctttcaatcgagttttctccttacacaggagatgatgattgaacccttaaccacttgctgaaggtgttcaaatcccttatcact 31322627  T
Q  316 tggatcaatccattattggtaggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattag 415  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322626 tggatcaattcattattgataggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattag 31322527  T
Q  416 tttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgacta 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322526 tttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgacta 31322427  T
Q  516 agatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322426 agatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 31322327  T
Q  616 tttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaat 683  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322326 tttatttttatcttagtcgcacaccttcaccatttcttctacccatatcctccatttctgctataaat 31322259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 564 - 675
Target Start/End: Original strand, 31321268 - 31321379
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 663  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| ||||||| | ||||||||||||||||| |||||||||||    
T  31321268 aaattaaaatttaaaaaccttggtccttccatctttttcctgtctttcttcctctattttcatcttagccgcacaccttcaccatttcgtctacccatat 31321367  T
Q  664 cctccatttctg 675  Q
    ||||||||||||    
T  31321368 cctccatttctg 31321379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 570 - 683
Target Start/End: Original strand, 34650747 - 34650860
Alignment:
Q  570 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 669  Q
    |||||| |||| |||||||||| |||||  ||| |||||||||| || ||||||||| |||||  |||| ||||||||||||||||||||||| |||  |    
T  34650747 aaattttaaaatcttggttcttacatctatttcatgtctttctttctctatttttattttagttgcacatcttcaccatttcttctacccatacccttta 34650846  T
Q  670 tttctgctataaat 683  Q
    ||||||||| ||||    
T  34650847 tttctgctaaaaat 34650860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 42563705 - 42563765
Alignment:
Q  135 ttttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcat 195  Q
    |||| ||| |||| || |||||||||||||| ||| ||||||| |||||||||||||||||    
T  42563705 tttttttactatgatattgatacaaagtttttaccctcgtttaacagtgattaatcttcat 42563765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 17833486 - 17833437
Alignment:
Q  286 ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt 335  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||| |||||    
T  17833486 ttgcttaaggggtccaaatcccttaccacttggataaatccattgttggt 17833437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 569 - 678
Target Start/End: Original strand, 38997568 - 38997677
Alignment:
Q  569 aaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcc 668  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||  ||||| ||||||||| ||||| |||||||||||||||||| ||||||||     
T  38997568 aaaatttaaaaaccttggttcttccatctttttcctgtttttcttcctccattttcatcttagtcgcacacattcaccatttcttctacctatatcctcg 38997667  T
Q  669 atttctgcta 678  Q
    ||||||||||    
T  38997668 atttctgcta 38997677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 577 - 675
Target Start/End: Original strand, 28803991 - 28804088
Alignment:
Q  577 aaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctg 675  Q
    ||||||||| |||||||||||| ||| | ||||||||| |  ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  28803991 aaaaccttgattcttccatctttttcctatctttcttcgtcaattttcatcttagtcgcacaccttcaccatttcttctacccatatcc-ccatttctg 28804088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 678
Target Start/End: Original strand, 37497494 - 37497563
Alignment:
Q  609 ttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgcta 678  Q
    ||||||||  ||||| ||||||||  ||||| |||||||||||||||| ||||||| ||||||| |||||    
T  37497494 ttcttcctccattttcatcttagttgcacactttcaccatttcttctatccatatcatccatttatgcta 37497563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 683
Target Start/End: Complemental strand, 13163675 - 13163559
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 663  Q
    ||||| ||||||||||| ||| |||||| || ||| | |||||||||||||||| ||||| | ||||  | ||||||||||| |||| ||||||| ||||    
T  13163675 aaattcaaatttaaaaatcttagttctttca-cttat-cgtgtctttcttccttcattttcaacttaaccgcacaccttcacaattt-ttctacctatat 13163579  T
Q  664 cctccatttctgctataaat 683  Q
    ||||||| | ||||| ||||    
T  13163578 cctccatatttgctaaaaat 13163559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 625
Target Start/End: Complemental strand, 28804657 - 28804602
Alignment:
Q  570 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttattttta 625  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||  |||||||    
T  28804657 aaatttaaaaatcttagttcttccatcttctttttgtctttcttcctccattttta 28804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 571 - 664
Target Start/End: Original strand, 3704689 - 3704782
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatc 664  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||  ||||    ||||||  |||||||||| |||||||||||||||||||    
T  3704689 aatttaaaaacattggctcttccatcttcttcatgtctttcttcctccatttcccccttagttgcacaccttcagcatttcttctacccatatc 3704782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 683
Target Start/End: Complemental strand, 35711398 - 35711285
Alignment:
Q  570 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 669  Q
    |||||||||||| || || |||||||||||||| |||||||||||||   |||| | ||||    || ||||||||| ||||||||| |||| |||||||    
T  35711398 aaatttaaaaacttttgtccttccatcttcttcatgtctttcttcctcccttttcaacttacctgcataccttcaccgtttcttctatccatttcctcca 35711299  T
Q  670 tttctgctataaat 683  Q
    ||||||||| ||||    
T  35711298 tttctgctaaaaat 35711285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 672
Target Start/End: Complemental strand, 39705092 - 39705007
Alignment:
Q  587 ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 672  Q
    |||||||||| ||||| ||||||||||||   ||||| ||||| | | ||||  ||||||||||||| ||||||||| ||||||||    
T  39705092 ttcttccatcctcttcatgtctttcttccaccattttcatcttggccgcacatattcaccatttcttatacccatattctccattt 39705007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 683
Target Start/End: Original strand, 3697875 - 3697923
Alignment:
Q  635 cacaccttcaccatttcttctacccatatcctccatttctgctataaat 683  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||| ||||    
T  3697875 cacaccttcactatttattctacccatatcgtccatttctgctaaaaat 3697923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 564 - 616
Target Start/End: Original strand, 28099210 - 28099262
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcct 616  Q
    ||||| |||||||||||| ||  || ||||||||||||| |||||||||||||    
T  28099210 aaattcaaatttaaaaacttttatttttccatcttcttcttgtctttcttcct 28099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 27823712 - 27823763
Alignment:
Q  572 atttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttt 623  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27823712 atttaaaaaccttggttcttccatcttcttcttgtctttcttccttcatttt 27823763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 564 - 683
Target Start/End: Original strand, 2687392 - 2687511
Alignment:
Q  564 aaattaaaatttaaaaaccttgg-ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccata 662  Q
    ||||| ||||||||||||||||| || ||| |||| ||||  |||||||||| |  ||||| ||||||| | ||||||||||||||||    ||||||||    
T  2687392 aaattcaaatttaaaaaccttgggtttttcaatct-cttccggtctttcttcttccattttcatcttagccgcacaccttcaccattttcaatacccata 2687490  T
Q  663 tcctccatttctgctataaat 683  Q
    |||||||||||||||| ||||    
T  2687491 tcctccatttctgctaaaaat 2687511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 683
Target Start/End: Complemental strand, 27167037 - 27166994
Alignment:
Q  640 cttcaccatttcttctacccatatcctccatttctgctataaat 683  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  27167037 cttcaccatttcttctacccatatcttccatttatgctaaaaat 27166994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 678
Target Start/End: Complemental strand, 28636291 - 28636181
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgt----gtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcct 666  Q
    ||||||||||| |||||| || |||||||||| |    || |||||||||  ||||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  28636291 aatttaaaaacattggttatttcatcttcttcatatatgtatttcttcctccattttcatcttagtctcacaccttcaccatttcttttaccca-atcct 28636193  T
Q  667 ccatttctgcta 678  Q
    |||||| |||||    
T  28636192 ccatttttgcta 28636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 683
Target Start/End: Complemental strand, 8332330 - 8332235
Alignment:
Q  588 tcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaat 683  Q
    |||||||||||||||   | ||||||||| |||||| ||||||| | ||||| |||| ||||||||||| |||||||  |||||||||||| ||||    
T  8332330 tcttccatcttcttccaatttttcttcctctattttcatcttagccacacactttcatcatttcttctatccatatcgaccatttctgctaaaaat 8332235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 564 - 615
Target Start/End: Original strand, 8331535 - 8331586
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 615  Q
    ||||| |||||||||||| |||||||||||||||||||  ||||||||||||    
T  8331535 aaattcaaatttaaaaactttggttcttccatcttcttgttgtctttcttcc 8331586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 672
Target Start/End: Original strand, 7491617 - 7491697
Alignment:
Q  592 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 672  Q
    ||||||||||| | ||||||||||   ||||| ||||||||| ||||  |||||  ||||||||||||||||||| |||||    
T  7491617 ccatcttcttcatatctttcttccaccattttcatcttagtcgcacatattcacagtttcttctacccatatccttcattt 7491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 667
Target Start/End: Complemental strand, 36139628 - 36139553
Alignment:
Q  592 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctc 667  Q
    ||||||||||| ||||||||||||   ||||| ||||||||| ||||  |||||||||||||| | | ||||||||    
T  36139628 ccatcttcttcatgtctttcttccaccattttaatcttagtcgcacatattcaccatttcttcaatctatatcctc 36139553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 671
Target Start/End: Complemental strand, 7492753 - 7492701
Alignment:
Q  619 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatt 671  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||    
T  7492753 attttcatcttagccgcacatattcactatttcttctacccatatcctccatt 7492701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 672
Target Start/End: Original strand, 7499666 - 7499746
Alignment:
Q  592 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 672  Q
    ||||||||||| ||||||||||||   ||||| |||| || | ||||  |||||  ||||||||||||||||||| |||||    
T  7499666 ccatcttcttcatgtctttcttccaccattttcatctaagccacacatattcacagtttcttctacccatatccttcattt 7499746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 671
Target Start/End: Complemental strand, 7500784 - 7500732
Alignment:
Q  619 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatt 671  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||    
T  7500784 attttcatcttagccgcacatattcactatttcttctacccatatcctccatt 7500732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 683
Target Start/End: Original strand, 12028377 - 12028484
Alignment:
Q  575 taaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttct 674  Q
    ||||||| ||| |||||||||||||||| |||||||| | ||  ||||| ||||||| | |||||||| |  ||||||| ||  ||||||||||||||||    
T  12028377 taaaaacattgtttcttccatcttcttcatgtctttc-tactccattttcatcttagccgcacacctttattatttcttataaacatatcctccatttct 12028475  T
Q  675 gctataaat 683  Q
    |||| ||||    
T  12028476 gctaaaaat 12028484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 657
Target Start/End: Complemental strand, 18160820 - 18160734
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 657  Q
    ||||||||||  | |||||||||||||||||| | ||||| ||||   ||||| ||||||| | |||| ||||||||||||||||||    
T  18160820 aatttaaaaatttcggttcttccatcttcttcctatcttttttccaccattttcatcttagccgcacatcttcaccatttcttctac 18160734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 649
Target Start/End: Original strand, 18160636 - 18160721
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 649  Q
    ||||| ||||||||||   |||||||||||||| ||||| ||||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18160636 aaattcaaatttaaaatttttggttcttccatcatcttcctgtctttcttccaccattttcattgtagtcgcacaccttcaccatt 18160721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 657
Target Start/End: Original strand, 18308481 - 18308567
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 657  Q
    ||||||||||  | |||||||||||||||||| | ||||||||||   ||||| |||||||   |||| ||| ||||||||||||||    
T  18308481 aatttaaaaatttcggttcttccatcttcttcctatctttcttccaccattttcatcttagctgcacatctttaccatttcttctac 18308567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 21612240 - 21612278
Alignment:
Q  298 tccaaatcccttatcacttggatcaatccattattggta 336  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  21612240 tccaaatctcttatcacttggatcaatccattgttggta 21612278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 649
Target Start/End: Original strand, 18159720 - 18159805
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 649  Q
    ||||| ||||||||||   |||||||||||||| ||||| | ||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18159720 aaattcaaatttaaaatttttggttcttccatcatcttcctatctttcttccaccattttcattgtagtcgcacaccttcaccatt 18159805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 47894 - 47845
Alignment:
Q  286 ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt 335  Q
    ||||| |||||| |||||| |||||||||||||| ||||||||| |||||    
T  47894 ttgcttaaggtgcccaaataccttatcacttggaccaatccattgttggt 47845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University