View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13574_low_2 (Length: 589)
Name: NF13574_low_2
Description: NF13574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13574_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 15506540 - 15506861
Alignment:
| Q |
19 |
ttagtgtcatcttagtctgtctgtattagtgtgtcattaactaacaacatatattgtaagatgtttttgtaattttggatgatggtgacctacatattca |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
15506540 |
ttagtgtcatcttaatctgtctgtattagtgtgtcattaactaacagcatatattgtaagatgtttttgtaattttggatgatagtgaccgacatattca |
15506639 |
T |
|
| Q |
119 |
aatactcaaatggctgtttactcttgaaagaaacataattctaagctgaaatatttgtctttaggactaggaagggtaaataaactctctcatgagctta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
15506640 |
aatactcaaatggctgtttactcttgaaagaaacataattctaagctgaaatatttgtccataggacttgaaagggtaaataaactctctcatgagctta |
15506739 |
T |
|
| Q |
219 |
ctcttacctcacattgatctcatactttcttgaacttgtgacaactatttagttgctctctctgacaataaagataagagtgctcacttcatagtacaac |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15506740 |
ctcttacctcatattgatctcatactttcttgaacttgtgacaactatttagttgctctctctgacaataaagataagagtgctcacttcatagtacaac |
15506839 |
T |
|
| Q |
319 |
cctctcacacactgatataaca |
340 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15506840 |
cctctcacacactgatataaca |
15506861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 364 - 583
Target Start/End: Original strand, 15506887 - 15507106
Alignment:
| Q |
364 |
caaaatgataagccccttgaagagtactttatgggaggcacattcaatacttgaaatgctctagtattgcagccttaaatctccactagtattaattgga |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
15506887 |
caaaatgataagccccttgaagagtactttatgggaggcacattcaatacttgaaatgctctagtgttgcagccttaaatctccaccagtattaattgga |
15506986 |
T |
|
| Q |
464 |
gattgagttgaccaaagatcatatgaaagacatgatggaaatccagcaaacaaagttcatttcttgcctctttcaggcatgtcttgttttgttcttattt |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15506987 |
gattgagttgaccaaagatcatatgaaagacatgatgggaatccagcaaacaaagttcatttcattcctctttcaagcatgtcttgttttgttcttattt |
15507086 |
T |
|
| Q |
564 |
ccacttgttagttcatctca |
583 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15507087 |
ccacttgttagttcatctca |
15507106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University