View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_high_11 (Length: 238)
Name: NF13576_high_11
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 43220774 - 43220555
Alignment:
| Q |
19 |
tcttcgcaaaactataaccaaagtgatatttggtacaaaatgataatgcatgccataactttgattttgagctgagtttaggtcttatattatctgtatt |
118 |
Q |
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| T |
43220774 |
tcttcgcaaaactataaccaaagtgatatttggtacaaaatgataatgcatgccatacctttgattttgagctgagtttaggtcttatattatctgtaat |
43220675 |
T |
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| Q |
119 |
ttgatgttcaaattacaactattttttccaatgaatattgatgtcaactatgattacgggaatcatttttaacaattccttcaatatggtatgctttgga |
218 |
Q |
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| T |
43220674 |
ttgatgttcaaattacaactattttttccaatgaatattgatgtcaactatgattatgggaatcatttttaacaattccttcaatatggtatgctttgga |
43220575 |
T |
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| Q |
219 |
atagaattgcatagtccgat |
238 |
Q |
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|||||||||||||| ||||| |
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| T |
43220574 |
atagaattgcatagaccgat |
43220555 |
T |
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