View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13576_high_13 (Length: 213)

Name: NF13576_high_13
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13576_high_13
NF13576_high_13
[»] chr2 (11 HSPs)
chr2 (3-152)||(29747125-29747274)
chr2 (68-141)||(31347405-31347478)
chr2 (48-141)||(38211339-38211432)
chr2 (66-134)||(18010909-18010977)
chr2 (69-153)||(33125407-33125490)
chr2 (3-130)||(17863231-17863358)
chr2 (12-154)||(24837182-24837323)
chr2 (44-132)||(31314645-31314733)
chr2 (12-119)||(29742295-29742401)
chr2 (83-153)||(33119191-33119260)
chr2 (154-189)||(29747073-29747108)
[»] chr4 (13 HSPs)
chr4 (36-153)||(1604688-1604804)
chr4 (44-132)||(1505339-1505427)
chr4 (44-132)||(2895141-2895229)
chr4 (44-132)||(5908497-5908585)
chr4 (39-128)||(5599255-5599344)
chr4 (44-132)||(13701957-13702045)
chr4 (44-132)||(13712450-13712538)
chr4 (39-132)||(4852040-4852133)
chr4 (48-128)||(24627362-24627442)
chr4 (79-154)||(3329495-3329569)
chr4 (69-152)||(20349574-20349657)
chr4 (82-128)||(7451215-7451261)
chr4 (75-128)||(6735770-6735823)
[»] chr7 (8 HSPs)
chr7 (35-148)||(3737850-3737963)
chr7 (44-128)||(19802252-19802336)
chr7 (44-132)||(42786499-42786587)
chr7 (44-132)||(48477399-48477487)
chr7 (62-142)||(20920353-20920433)
chr7 (48-128)||(21959210-21959290)
chr7 (44-132)||(3079024-3079112)
chr7 (44-127)||(4340549-4340632)
[»] chr6 (8 HSPs)
chr6 (44-132)||(5131336-5131424)
chr6 (44-126)||(34256189-34256271)
chr6 (68-132)||(31113651-31113715)
chr6 (39-128)||(33301119-33301208)
chr6 (44-128)||(28144393-28144477)
chr6 (82-132)||(6406206-6406256)
chr6 (44-128)||(8519281-8519365)
chr6 (68-132)||(14679568-14679632)
[»] chr3 (13 HSPs)
chr3 (48-148)||(2747075-2747175)
chr3 (16-134)||(12092467-12092585)
chr3 (44-128)||(14521645-14521729)
chr3 (44-132)||(18111091-18111179)
chr3 (35-142)||(27170115-27170222)
chr3 (47-132)||(37489374-37489459)
chr3 (46-126)||(19359868-19359948)
chr3 (53-132)||(5835276-5835355)
chr3 (48-134)||(7782831-7782917)
chr3 (46-132)||(19440715-19440801)
chr3 (68-132)||(28034338-28034402)
chr3 (82-132)||(5938385-5938435)
chr3 (42-132)||(8678161-8678251)
[»] chr1 (13 HSPs)
chr1 (44-132)||(15088261-15088349)
chr1 (44-132)||(22210869-22210957)
chr1 (44-132)||(22219619-22219707)
chr1 (74-132)||(22207306-22207364)
chr1 (47-153)||(14150122-14150227)
chr1 (3-141)||(17914248-17914386)
chr1 (68-132)||(7898990-7899054)
chr1 (33-134)||(1944749-1944849)
chr1 (63-134)||(7064027-7064098)
chr1 (46-132)||(44193460-44193546)
chr1 (53-132)||(1991596-1991675)
chr1 (39-132)||(14115535-14115628)
chr1 (63-126)||(51843949-51844012)
[»] chr8 (8 HSPs)
chr8 (39-132)||(20811011-20811104)
chr8 (44-131)||(4844420-4844507)
chr8 (62-148)||(25004005-25004091)
chr8 (46-126)||(5557130-5557210)
chr8 (47-141)||(24974950-24975044)
chr8 (48-132)||(25336125-25336209)
chr8 (53-132)||(3166428-3166507)
chr8 (16-123)||(9984444-9984551)
[»] chr5 (6 HSPs)
chr5 (34-134)||(21098954-21099054)
chr5 (46-126)||(41527884-41527964)
chr5 (53-132)||(26075646-26075725)
chr5 (42-123)||(23213637-23213719)
chr5 (76-128)||(19078726-19078778)
chr5 (35-121)||(19209949-19210035)
[»] scaffold0024 (1 HSPs)
scaffold0024 (53-132)||(63468-63547)
[»] scaffold0158 (2 HSPs)
scaffold0158 (62-128)||(5-71)
scaffold0158 (44-122)||(37443-37521)
[»] scaffold0060 (1 HSPs)
scaffold0060 (63-132)||(45204-45273)
[»] scaffold0046 (1 HSPs)
scaffold0046 (48-132)||(89840-89924)
[»] scaffold0043 (1 HSPs)
scaffold0043 (44-132)||(70124-70212)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 29747274 - 29747125
Alignment:
Q  3 cagaacaacacaataaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttac 102  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29747274 cagaacaacacagtaaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaactcac 29747175  T
Q  103 tgagacatcctgtctcaccccaatccctttatcttattttcagataagca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29747174 tgagacatcctgtctcaccccaatccctttatcttattttcagataagca 29747125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 31347405 - 31347478
Alignment:
Q  68 gagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattt 141  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||  |||||||    
T  31347405 gagattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcctttttacttattt 31347478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 38211432 - 38211339
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattt 141  Q
    |||| ||||||||  ||||| |||| ||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  38211432 atggcgatcataggctccccaagattgcctacaacttaggataggtggaactcactgagagatcctgtctcaccccaatccttttattttattt 38211339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 18010977 - 18010909
Alignment:
Q  66 ccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttat 134  Q
    ||||||| |||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18010977 ccgagattgcctgcagcctaggataggtggaactcactgagacatcctgtctcaccccaatccctttat 18010909  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 33125407 - 33125490
Alignment:
Q  69 agatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcagataagcag 153  Q
    ||||||||||||  |||||||| |||||||| ||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  33125407 agatcgcctacagtctaggataggtggaactcactaagacatcatgtctcaccccaatccctttattttatttt-agataagcag 33125490  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 17863358 - 17863231
Alignment:
Q  3 cagaacaacacaataaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttac 102  Q
    |||||||  ||| |||||| |||||| || |||||||| ||||  |||  |||||||| ||||||||||| || || ||||||| ||| |||||||| ||    
T  17863358 cagaacataacagtaaatcataaaattaggtatatgtatagacgaatgacgatcataggttccccgagattgcatataacctagaataggtggaactcac 17863259  T
Q  103 tgagacatcctgtctcaccccaatccct 130  Q
    ||||||||| |||||||||||| |||||    
T  17863258 tgagacatcatgtctcaccccagtccct 17863231  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 24837323 - 24837182
Alignment:
Q  12 acaataaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatc 111  Q
    |||||| |||||||||| || || ||||| ||| | |||| |||||||| |||||| ||||  | |||| |||| |||| | |||||| |||||| ||||    
T  24837323 acaatatatcctaaaattaggtacatgtacagatatatggcgatcataggttccccaagatttcttacatcctaagataggcggaactcactgagccatc 24837224  T
Q  112 ctgtctcaccccaatccctttatcttattttcagataagcaga 154  Q
     ||||||||| |||||||||||| ||||||||| |||||||||    
T  24837223 atgtctcacctcaatccctttat-ttattttcaaataagcaga 24837182  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 31314733 - 31314645
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||| ||||    
T  31314733 acagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgaaacatcatgtctcaccccgatctcttt 31314645  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 29742401 - 29742295
Alignment:
Q  12 acaataaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatc 111  Q
    |||||||||| || ||| || |||||||| | |||||||| |||||||| ||||| ||||| ||||||||||||  ||| |||||||| ||||||| |||    
T  29742401 acaataaatc-tataattaggtatatgtacaaacagatggcgatcataggttccctgagattgcctacaacctaaaataggtggaactcactgagatatc 29742303  T
Q  112 ctgtctca 119  Q
    | ||||||    
T  29742302 ccgtctca 29742295  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 33119191 - 33119260
Alignment:
Q  83 ctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcagataagcag 153  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  33119191 ctaggataagtggaactcactaagacatcatgtctcaccccaatccctttatttcatttt-agataagcag 33119260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 29747108 - 29747073
Alignment:
Q  154 aaaggttcatgccagatatcaacagaaggaagccgg 189  Q
    ||||||||||||||||||||||||||||||||||||    
T  29747108 aaaggttcatgccagatatcaacagaaggaagccgg 29747073  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 1604688 - 1604804
Alignment:
Q  36 atgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatc 135  Q
    ||||| |||||||||| ||| |||| ||||| ||  ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||     
T  1604688 atgtaaagacagatggcgattataggttccctgaagtcgcctacaacctaggataggtggaactcactgagacctcctgtctcaccccaatccctttat- 1604786  T
Q  136 ttattttcagataagcag 153  Q
    |||||||||||| |||||    
T  1604787 ttattttcagatgagcag 1604804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 1505427 - 1505339
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||    
T  1505427 acagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactaagacatcttgtctcaccccaatcccttt 1505339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 2895141 - 2895229
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||||||| | ||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  2895141 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttt 2895229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 5908585 - 5908497
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||||||| | ||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  5908585 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttt 5908497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 5599344 - 5599255
Alignment:
Q  39 tagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||| |||||||| |||| ||| ||||| ||| | |||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  5599344 tagaaacagatggggatcctaggttccctgaggttgcctacaacctaggatagatggaactcactgagacatcttgtctcaccccaatcc 5599255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 13702045 - 13701957
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| || || ||||| || |||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  13702045 acagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatcttatctcaccccaatcccttt 13701957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 13712538 - 13712450
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| || || ||||| || |||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  13712538 acagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatcttatctcaccccaatcccttt 13712450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 4852133 - 4852040
Alignment:
Q  39 tagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||| |||| |||| ||| ||||||||| | ||||||||||||||||| |||||||| | ||| ||||| ||||||| ||||||||||||    
T  4852133 tagaaacaaatggcgatcctaggttccccgaggttgcctacaacctaggataggtggaactcagtgaaacatcttgtctcatcccaatcccttt 4852040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 24627442 - 24627362
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||| |||||||| ||||| ||||| ||||||| ||||||||| ||||||||  |||||||||| ||| ||||||||||||    
T  24627442 atggcgatcataggttccctgagattgcctacatcctaggataggtggaactcgctgagacatcatgtgtcaccccaatcc 24627362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 3329495 - 3329569
Alignment:
Q  79 caacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcagataagcaga 154  Q
    ||||||| |||| |||||||| ||||||||||| |||||||||||||||| |||| |||  |||||||||||||||    
T  3329495 caacctaagataggtggaactcactgagacatcttgtctcaccccaatcctttta-ctttatttcagataagcaga 3329569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 20349574 - 20349657
Alignment:
Q  69 agatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcagataagca 152  Q
    |||| ||||||| ||||| ||| |||||||| ||||||||||| ||||||| |||||| | ||||| ||  |||||| ||||||    
T  20349574 agattgcctacagcctagtataggtggaactcactgagacatcttgtctcatcccaattcttttatttttatttcagttaagca 20349657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 7451261 - 7451215
Alignment:
Q  82 cctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    ||||||||| ||||||||||||||||| |  ||||||||||||||||    
T  7451261 cctaggataggtggaacttactgagaccttatgtctcaccccaatcc 7451215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 6735770 - 6735823
Alignment:
Q  75 cctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||||| | ||||||| |||||||| ||||||||||| ||||||| ||||||||    
T  6735770 cctacagcttaggataggtggaactcactgagacatcatgtctcatcccaatcc 6735823  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 3737850 - 3737963
Alignment:
Q  35 tatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttat 134  Q
    |||||||| |||||  |||||||||  ||||| ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  3737850 tatgtagaaacagacagtgatcatatgttccctgagatcgcctacaacctagaataggtggaactcactgagacatcatgtctcaccccaatccctttat 3737949  T
Q  135 cttattttcagata 148  Q
     ||  |||||||||    
T  3737950 ttttatttcagata 3737963  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 19802336 - 19802252
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||||||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  19802336 acagatggcgatcgtaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcc 19802252  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 42786499 - 42786587
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||||||| | ||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  42786499 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttt 42786587  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 48477487 - 48477399
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||||||| | ||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  48477487 acagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttt 48477399  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 20920353 - 20920433
Alignment:
Q  62 ttccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttatttt 142  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||| || |||| |||||||| || || |||||||    
T  20920353 ttccccgagattgcctacaacctaggataggtggaactcactgagacatcatgcctcatcccaatcctttcattttatttt 20920433  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 21959210 - 21959290
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  21959210 atggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcc 21959290  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 3079024 - 3079112
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| | |||  ||||| |||||||||| |||||||| | ||||||||||||||||| ||||||||||||    
T  3079024 acagatggcgatcctaggttccctgcgatttcctactacctaggataggtggaactcattgagacatcctgtctcagcccaatcccttt 3079112  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 4340632 - 4340549
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatc 127  Q
    ||||||| ||||| ||| || |||||| | ||||||| ||||||||| |||||||| ||||||||||  |||||||||||||||    
T  4340632 acagatgatgatcctaggtttcccgaggttgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatc 4340549  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 5131336 - 5131424
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  5131336 acagatggcgatcctaggttccccgagattgcctacaacctaggataggtggaactcactgagacatcttgtctcaccccaatcccttt 5131424  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 34256189 - 34256271
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaat 126  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||||||| |||||||| |||||| |||  ||||||||||||||    
T  34256189 acagatggcgatcctagattccccgagattgcctacagcctaggataggtggaactcactgaggcattttgtctcaccccaat 34256271  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 31113651 - 31113715
Alignment:
Q  68 gagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  31113651 gagattgcctacagcctaggataggtggaactcactgagacatcatgtctcaccccaatcccttt 31113715  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 33301119 - 33301208
Alignment:
Q  39 tagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||| |||||| | |||| ||| |||||| || | |||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  33301119 tagaaacagattgcgatcctaggttcccccaggttgcctacaacctaggatagatggaactcactgagacatcttgtctcaccccaatcc 33301208  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 28144477 - 28144393
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||||||| |||| ||| ||||||||||| |||||||  |||| ||| |||||||| ||||||||||  ||||||| ||||||||    
T  28144477 acagatggcgatcctaggttccccgagattgcctacagtctagtataggtggaactcactgagacattttgtctcagcccaatcc 28144393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 6406256 - 6406206
Alignment:
Q  82 cctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||||||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  6406256 cctaggataggtgcaactcactgagacatcatgtctcaccccaatcccttt 6406206  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 8519365 - 8519281
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    ||||||||||||| ||| ||||  ||||| |||||||||||| |||| ||| |||| ||| ||||||  ||||||||| ||||||    
T  8519365 acagatggtgatcctaggttcctagagattgcctacaacctaagataggtgaaactcacttagacattttgtctcacctcaatcc 8519281  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 14679632 - 14679568
Alignment:
Q  68 gagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||| ||||||||| ||||||| ||| |||| ||| |||||||||||| |||| |||| |||||    
T  14679632 gagattgcctacaacataggataagtgaaactcactaagacatcctgtcacacctcaataccttt 14679568  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 2747075 - 2747175
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcagat 147  Q
    |||| |||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||   ||||||||||||    
T  2747075 atggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattttcagat 2747174  T
Q  148 a 148  Q
    |    
T  2747175 a 2747175  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 12092467 - 12092585
Alignment:
Q  16 taaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgt 115  Q
    |||||||| ||||||| |||||||||||||| |||  |||||||||||||  ||||| ||||||||||||  ||| |||||| | ||||||| |||||||    
T  12092467 taaatcctgaaatcaggtatatgtagagacaaatgacgatcatagattccatgagattgcctacaacctaaaataggtggaattcactgagatatcctgt 12092566  T
Q  116 ctcaccccaatccctttat 134  Q
    |||| |||| |||||||||    
T  12092567 ctcatcccattccctttat 12092585  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 14521645 - 14521729
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||||||| |||||||| ||| ||||||  ||||||||||||||||    
T  14521645 acagatggcgatcttagattccccgagattgcctacagcctaggataggtggaactcactaagacattttgtctcaccccaatcc 14521729  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 18111179 - 18111091
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| || || ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||    
T  18111179 acagatggcgatcctaggttccctgatattgcctacaacctaggataggtggaactcactgagacatcatgtctcaccccgatcccttt 18111091  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 27170222 - 27170115
Alignment:
Q  35 tatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttat 134  Q
    |||||| ||||||||||||||||||| ||||  ||||| |||| ||||||| ||||  ||||||| ||||||||||| ||||||||| |||||  |||||    
T  27170222 tatgtatagacagatggtgatcataggttcctagagattgccttcaacctatgatagatggaactcactgagacatcatgtctcacctcaatcattttat 27170123  T
Q  135 cttatttt 142  Q
     |||||||    
T  27170122 tttatttt 27170115  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 37489459 - 37489374
Alignment:
Q  47 gatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||| |||| ||| || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||    
T  37489459 gatggcgatcctaggtttcctgagattgcctacaacctaggataggtggaactcaccgagacatcttgtctcaccccaatcccttt 37489374  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 19359868 - 19359948
Alignment:
Q  46 agatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaat 126  Q
    |||||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||    
T  19359868 agatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaat 19359948  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 5835355 - 5835276
Alignment:
Q  53 gatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||| ||||| ||||| ||||| | ||||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  5835355 gatcctaggttccctgagattgcctatagcctaggataggtggaactcactgagacatcctatctcaccccaatcccttt 5835276  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 7782917 - 7782831
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttat 134  Q
    ||||||||||||| ||||||||||| ||||| | | ||||||| |||||||| ||| ||||||| |||||||||| ||||| |||||    
T  7782917 atggtgatcataggttccccgagattgcctatagcttaggataggtggaactcactaagacatcgtgtctcaccctaatccatttat 7782831  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 19440801 - 19440715
Alignment:
Q  46 agatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||| |||| ||| ||||  ||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||| ||||||||||    
T  19440801 agatggcgatcctaggttccttgagattgcctacagcctaggataggtggaactcactgagacatcatgtctcacctcaatcccttt 19440715  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 28034402 - 28034338
Alignment:
Q  68 gagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||| ||| ||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||    
T  28034402 gagattgccaacaacctaggataggtggaattcactgagacatcttgtctcaccccaatcccttt 28034338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 5938435 - 5938385
Alignment:
Q  82 cctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  5938435 cctaggataggtggaactcactgagacatcctatctcaccccaatcccttt 5938385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 8678251 - 8678161
Alignment:
Q  42 agacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||||| |||||||| ||| |||||||   ||| | ||||||||| |||| ||| ||||||||| ||| |||||||||||| |||||    
T  8678251 agacagatggcgatcatagtttctccgagattatctatagcctaggataagtgggactcactgagacaacctatctcaccccaattccttt 8678161  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 15088349 - 15088261
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| | ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15088349 acagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttt 15088261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 22210957 - 22210869
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| | ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  22210957 acagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttt 22210869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 22219707 - 22219619
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| |||| ||| ||||| | ||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  22219707 acagatggcgatcctaggttccctgcgattgcctacaacctaggataggtgcaactcactgagacatcctgtctcaccccaatcccttt 22219619  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 22207364 - 22207306
Alignment:
Q  74 gcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  22207364 gcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttt 22207306  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 14150122 - 14150227
Alignment:
Q  47 gatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcaga 146  Q
    ||||| ||| |||| ||||||||||| |||||||   ||||||| |||||||| || |||||||| |||||||||||||||| ||||| ||| |||||||    
T  14150122 gatggcgattataggttccccgagattgcctacagtttaggataggtggaactcaccgagacatcatgtctcaccccaatccttttatttta-tttcaga 14150220  T
Q  147 taagcag 153  Q
    |||||||    
T  14150221 taagcag 14150227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 17914386 - 17914248
Alignment:
Q  3 cagaacaacacaataaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttac 102  Q
    |||||||| | | |||||||| ||||||  ||||||||||||||||||  |||||||| ||||  ||| | |||||||  |||||||| |||||||| ||    
T  17914386 cagaacaaaatagtaaatcctgaaatcatgtatatgtagagacagatgacgatcataggttccttgaggttgcctacattctaggataggtggaactcac 17914287  T
Q  103 tgagacatcctgtctcaccccaatccctttatcttattt 141  Q
    | ||||||| ||||||| | || ||||||||| ||||||    
T  17914286 taagacatcatgtctcatctcattccctttattttattt 17914248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 7899054 - 7898990
Alignment:
Q  68 gagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||| |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  7899054 gagattgcctacaatctaggataggtggaactcactgagacatcttgtctcaccccaatcccttt 7898990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 1944749 - 1944849
Alignment:
Q  33 tatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| ||||| |||| ||||||||  |||| || || ||||||||||||||| | |||||||| ||| |||||||| |||||||||||||| ||||    
T  1944749 tatatgtacagacatatggcgatcataggatccc-gatattgcctacaacctaggaaaggtggaactcactaagacatccggtctcaccccaatcgcttt 1944847  T
Q  133 at 134  Q
    ||    
T  1944848 at 1944849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 7064098 - 7064027
Alignment:
Q  63 tccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttat 134  Q
    ||||| |||| ||||||||||||||||| |||||||| ||||||||||  |||||||||| ||||| |||||    
T  7064098 tccccaagattgcctacaacctaggataggtggaactcactgagacattatgtctcaccctaatccttttat 7064027  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 44193460 - 44193546
Alignment:
Q  46 agatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||| |||| ||| ||||  ||||| ||||||||||||||||| |||||||| || |||||||   |||||||||||||||||||    
T  44193460 agatggcgatcctaggttccttgagattgcctacaacctaggataggtggaactcaccgagacatttcgtctcaccccaatcccttt 44193546  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 1991596 - 1991675
Alignment:
Q  53 gatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||||||| || |||||||| || |||||| || |||| |||||||| ||||||||||| ||  ||||||||||||||||    
T  1991596 gatcataggtttcccgagattgcgtacaacttatgataggtggaactcactgagacatcatgcgtcaccccaatcccttt 1991675  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 14115535 - 14115628
Alignment:
Q  39 tagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||| |||| |||||||| || |||||| | || | || ||||||||| |||||||   |||||||||| ||||||||||||||||||||    
T  14115535 tagaaacaaatggcgatcataggtttcccgaggttgcttgcagcctaggataggtggaacgcgctgagacatcttgtctcaccccaatcccttt 14115628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 51844012 - 51843949
Alignment:
Q  63 tccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaat 126  Q
    |||| ||||| ||||||| | || |||| |||||||| ||||||||||| ||||||||||||||    
T  51844012 tccctgagattgcctacaccttaagataggtggaactcactgagacatcatgtctcaccccaat 51843949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 20811011 - 20811104
Alignment:
Q  39 tagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| |||||||| |||| ||| ||| | ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  20811011 tagaaacagatggcgatcctaggttcactgagattgcctacaacctaggataggtggaactcactgagacattctgtctcaccccaatcccttt 20811104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 4844420 - 4844507
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctt 131  Q
    |||||||| |||| ||| ||||| ||||| ||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||    
T  4844420 acagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgcggcatcctgtctcaccccaatccctt 4844507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 25004005 - 25004091
Alignment:
Q  62 ttccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattttcagata 148  Q
    ||||| ||||| ||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||  |||||||||    
T  25004005 ttccctgagattgcctacagcctaggataggtggaactcactgagacattctgtctcaccccaatccctttatttttatttcagata 25004091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 5557210 - 5557130
Alignment:
Q  46 agatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaat 126  Q
    |||||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||    
T  5557210 agatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaat 5557130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 24974950 - 24975044
Alignment:
Q  47 gatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatccctttatcttattt 141  Q
    ||||| |||||||||||| |||||||  | ||||   |||||||||||||||| ||||||| |||||||||||||||| | ||||||| ||||||    
T  24974950 gatggcgatcatagattctccgagatttcatacattttaggatatgtggaactcactgagatatcctgtctcaccccatttcctttattttattt 24975044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 25336209 - 25336125
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| |||| ||| ||||| ||||| ||||| | ||||||||| |||||||| |||| ||||||||||||||||||||| |||||    
T  25336209 atggcgatcctaggttccctgagattgcctatagcctaggataggtggaactcactgggacatcctgtctcaccccaattccttt 25336125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 3166428 - 3166507
Alignment:
Q  53 gatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||| ||||| ||||| |||||||||||||||||  ||||||| |  |||||||| ||||||||||||||| ||||    
T  3166428 gatcctaggttccctgagattgcctacaacctaggatagatggaactcatcgagacatcatgtctcaccccaatcacttt 3166507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 9984444 - 9984551
Alignment:
Q  16 taaatcctaaaatcagatatatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgt 115  Q
    |||||| | |||| || |||||| || |||| ||||  ||||||||||||  ||||| | ||||| ||||||||| |||||||| | ||||| || ||||    
T  9984444 taaatcatgaaattaggtatatgcagcgacaaatggcaatcatagattccttgagattgtctacagcctaggataggtggaactcattgagatattctgt 9984543  T
Q  116 ctcacccc 123  Q
    ||||||||    
T  9984544 ctcacccc 9984551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 21099054 - 21098954
Alignment:
Q  34 atatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttta 133  Q
    ||||||| ||||| |||| |||||||||||||||| ||| ||| ||| ||||||||| |||||||| ||||| |||| |||||||| | |||||| ||||    
T  21099054 atatgtatagacaaatggcgatcatagattccccgcgattgcccacagcctaggataggtggaactcactgaaacattctgtctcatctcaatcctttta 21098955  T
Q  134 t 134  Q
    |    
T  21098954 t 21098954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 41527964 - 41527884
Alignment:
Q  46 agatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaat 126  Q
    |||||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||    
T  41527964 agatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaat 41527884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 26075646 - 26075725
Alignment:
Q  53 gatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||| ||| ||||||| ||||||||| ||||||  |||||||| ||||| ||||||||||||||||||||||||||    
T  26075646 gatcctaggttctccgagattgcctacaacataggattggtggaactcactgatacatcctgtctcaccccaatcccttt 26075725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 23213719 - 23213637
Alignment:
Q  42 agacagatggtgatcatagatt-ccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcacccc 123  Q
    |||||||||| |||||||| || ||||||||| ||||| ||||||||||| |||||||| ||| ||||||  |||||||||||    
T  23213719 agacagatggcgatcataggtttccccgagattgcctaaaacctaggataggtggaactcactaagacataatgtctcacccc 23213637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 19078726 - 19078778
Alignment:
Q  76 ctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    ||||| ||||||||| |||||||| |||||||||||| |||||| ||||||||    
T  19078726 ctacagcctaggataggtggaactcactgagacatcccgtctcatcccaatcc 19078778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 19210035 - 19209949
Alignment:
Q  35 tatgtagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcacc 121  Q
    |||||| |||||||||| ||||| |  ||| |||||||  |||||||||||| ||| ||| |||| |||||||||||  ||||||||    
T  19210035 tatgtacagacagatggcgatcaaatgttctccgagattacctacaacctagaataggtgaaactcactgagacatctcgtctcacc 19209949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 63547 - 63468
Alignment:
Q  53 gatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||| ||||||||||| || |||||| ||||||| |||||||| |||||||||||||||| |||||||||| ||||    
T  63547 gatcgtaggttccccgagatagcatacaacttaggataggtggaactcactgagacatcctgtcacaccccaatctcttt 63468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 5 - 71
Alignment:
Q  62 ttccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcc 128  Q
    ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  5 ttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcc 71  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 37443 - 37521
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccc 122  Q
    |||||||| |||  ||| ||||||||||| | ||||| ||||||||| |||||||| | ||||||||  ||||||||||    
T  37443 acagatggcgattgtaggttccccgagattgtctacagcctaggataggtggaactaaatgagacattttgtctcaccc 37521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 45204 - 45273
Alignment:
Q  63 tccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| ||||| |||||||||||||| ||||||||||| ||| ||||||  ||||||||||||||||||||    
T  45204 tccctgagattgcctacaacctagggtatgtggaactcactaagacattttgtctcaccccaatcccttt 45273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 89924 - 89840
Alignment:
Q  48 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    |||| |||| ||| ||||| | ||| ||||||| ||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  89924 atggcgatcctaggttccctgtgattgcctacagcctaggataggtggaactcactgagacatcttgtctcactccaatcccttt 89840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 70124 - 70212
Alignment:
Q  44 acagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaacttactgagacatcctgtctcaccccaatcccttt 132  Q
    ||||||| ||||| ||| | ||| ||||| |||| || ||||||||| |||||||| ||||||||||| |||||||||| |||||||||    
T  70124 acagatgttgatcctaggtaccctgagattgcctgcatcctaggataggtggaactcactgagacatcttgtctcacccgaatcccttt 70212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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