View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13576_high_2 (Length: 437)

Name: NF13576_high_2
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13576_high_2
NF13576_high_2
[»] chr3 (32 HSPs)
chr3 (257-421)||(6913471-6913646)
chr3 (26-217)||(6913249-6913437)
chr3 (1-88)||(29503372-29503459)
chr3 (1-98)||(4172466-4172564)
chr3 (2-98)||(50611495-50611592)
chr3 (1-98)||(25631603-25631702)
chr3 (2-98)||(38855114-38855212)
chr3 (1-98)||(2342391-2342489)
chr3 (1-98)||(39917474-39917571)
chr3 (1-98)||(46934542-46934639)
chr3 (1-88)||(4178474-4178562)
chr3 (1-88)||(25162346-25162433)
chr3 (1-88)||(36906031-36906119)
chr3 (1-85)||(38440655-38440739)
chr3 (1-98)||(44907475-44907574)
chr3 (1-93)||(32607372-32607466)
chr3 (1-98)||(14464407-14464507)
chr3 (28-93)||(35499306-35499371)
chr3 (1-88)||(17237712-17237802)
chr3 (28-98)||(3850560-3850630)
chr3 (1-98)||(49552301-49552398)
chr3 (28-98)||(12115993-12116063)
chr3 (1-62)||(30648796-30648858)
chr3 (48-98)||(36735277-36735327)
chr3 (17-98)||(46178476-46178558)
chr3 (26-88)||(37169140-37169203)
chr3 (1-82)||(42719436-42719514)
chr3 (29-70)||(20987942-20987983)
chr3 (38-82)||(31793997-31794039)
chr3 (29-82)||(52116154-52116207)
chr3 (48-88)||(22802931-22802971)
chr3 (42-70)||(47042208-47042236)
[»] chr2 (41 HSPs)
chr2 (329-418)||(39384587-39384676)
chr2 (1-98)||(32913148-32913245)
chr2 (1-88)||(40660009-40660094)
chr2 (1-98)||(3725087-3725184)
chr2 (1-98)||(4192745-4192842)
chr2 (9-98)||(27477061-27477150)
chr2 (1-98)||(21570484-21570583)
chr2 (1-88)||(34598904-34598991)
chr2 (1-90)||(3270306-3270395)
chr2 (1-88)||(8805783-8805870)
chr2 (1-88)||(26025487-26025574)
chr2 (1-98)||(6173538-6173636)
chr2 (1-98)||(45128110-45128208)
chr2 (1-98)||(40626105-40626202)
chr2 (5-98)||(8971708-8971803)
chr2 (1-81)||(22421659-22421739)
chr2 (1-98)||(30420583-30420682)
chr2 (1-98)||(36233911-36234012)
chr2 (1-88)||(32680658-32680747)
chr2 (1-98)||(41430934-41431032)
chr2 (1-98)||(2808549-2808645)
chr2 (1-85)||(7015788-7015872)
chr2 (12-88)||(31581808-31581884)
chr2 (28-98)||(27249256-27249326)
chr2 (9-88)||(39641943-39642024)
chr2 (1-90)||(41712842-41712932)
chr2 (1-69)||(9986419-9986491)
chr2 (1-93)||(20047159-20047252)
chr2 (28-88)||(27949339-27949399)
chr2 (1-88)||(32197872-32197959)
chr2 (28-98)||(42949620-42949691)
chr2 (1-63)||(3269188-3269252)
chr2 (1-63)||(3269747-3269811)
chr2 (2-88)||(4228048-4228136)
chr2 (17-62)||(36323801-36323846)
chr2 (258-299)||(39384685-39384726)
chr2 (39-98)||(459390-459449)
chr2 (1-56)||(25086986-25087041)
chr2 (28-70)||(1415479-1415521)
chr2 (28-82)||(18694970-18695024)
chr2 (38-70)||(37994188-37994220)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-86)||(201450-201534)
[»] chr1 (37 HSPs)
chr1 (1-88)||(14545436-14545523)
chr1 (1-98)||(51871770-51871867)
chr1 (1-93)||(3871320-3871412)
chr1 (1-88)||(28035055-28035143)
chr1 (1-88)||(30818423-30818510)
chr1 (1-98)||(5701163-5701263)
chr1 (1-83)||(34519054-34519136)
chr1 (1-98)||(51868722-51868820)
chr1 (1-88)||(20266218-20266306)
chr1 (1-98)||(9919295-9919393)
chr1 (1-88)||(11453850-11453939)
chr1 (1-88)||(7997703-7997793)
chr1 (1-88)||(25406361-25406449)
chr1 (1-88)||(27872655-27872742)
chr1 (1-88)||(38520611-38520698)
chr1 (1-90)||(45426143-45426229)
chr1 (1-88)||(35584695-35584786)
chr1 (5-98)||(50272221-50272315)
chr1 (1-69)||(19723268-19723337)
chr1 (28-88)||(25728064-25728124)
chr1 (1-88)||(5324635-5324722)
chr1 (1-98)||(9172394-9172494)
chr1 (1-98)||(9180376-9180476)
chr1 (38-88)||(18569425-18569475)
chr1 (39-93)||(19716013-19716067)
chr1 (1-70)||(33291495-33291565)
chr1 (2-88)||(40646604-40646692)
chr1 (1-85)||(50166176-50166261)
chr1 (38-98)||(30878981-30879041)
chr1 (17-88)||(7312192-7312263)
chr1 (1-88)||(40881089-40881178)
chr1 (1-98)||(50148278-50148378)
chr1 (17-98)||(15397309-15397390)
chr1 (1-62)||(31836748-31836811)
chr1 (1-70)||(7342656-7342726)
chr1 (1-70)||(44637356-44637425)
chr1 (48-88)||(39987306-39987346)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-98)||(8622-8719)
[»] chr4 (43 HSPs)
chr4 (1-98)||(31381749-31381846)
chr4 (1-88)||(8009438-8009524)
chr4 (1-88)||(51317910-51317997)
chr4 (1-98)||(34024514-34024611)
chr4 (1-88)||(37188671-37188757)
chr4 (1-98)||(50766586-50766684)
chr4 (1-88)||(38706787-38706875)
chr4 (1-93)||(4643777-4643870)
chr4 (1-88)||(10389831-10389918)
chr4 (2-88)||(32952826-32952911)
chr4 (1-98)||(1531820-1531920)
chr4 (7-88)||(21090077-21090158)
chr4 (1-88)||(43444317-43444405)
chr4 (1-88)||(56194523-56194613)
chr4 (1-99)||(9645626-9645725)
chr4 (1-88)||(10359624-10359711)
chr4 (1-88)||(2115664-2115753)
chr4 (1-88)||(53616727-53616816)
chr4 (1-70)||(868106-868174)
chr4 (1-93)||(35261110-35261203)
chr4 (38-98)||(47416798-47416858)
chr4 (2-98)||(9528955-9529053)
chr4 (1-81)||(25273811-25273895)
chr4 (1-81)||(29965565-29965647)
chr4 (1-98)||(9283825-9283923)
chr4 (1-86)||(14183729-14183815)
chr4 (38-93)||(27593953-27594008)
chr4 (17-88)||(35351254-35351325)
chr4 (1-88)||(6972733-6972822)
chr4 (1-98)||(12265369-12265467)
chr4 (28-98)||(20569166-20569236)
chr4 (28-98)||(43154126-43154195)
chr4 (28-93)||(49680456-49680521)
chr4 (28-80)||(46991235-46991287)
chr4 (3-62)||(1931795-1931854)
chr4 (26-89)||(49072860-49072923)
chr4 (28-70)||(2624440-2624482)
chr4 (48-93)||(5333656-5333701)
chr4 (28-88)||(35965079-35965140)
chr4 (42-86)||(1008221-1008265)
chr4 (48-88)||(5333584-5333624)
chr4 (17-61)||(21554902-21554946)
chr4 (42-70)||(36194637-36194665)
[»] chr5 (33 HSPs)
chr5 (258-326)||(40601214-40601282)
chr5 (2-98)||(28235490-28235586)
chr5 (1-98)||(18677542-18677641)
chr5 (1-81)||(30298130-30298210)
chr5 (5-88)||(781304-781387)
chr5 (1-88)||(21060359-21060446)
chr5 (1-76)||(27751853-27751928)
chr5 (1-88)||(35475414-35475501)
chr5 (1-98)||(2057915-2058013)
chr5 (1-93)||(7246868-7246961)
chr5 (1-98)||(36344568-36344664)
chr5 (1-98)||(27266936-27267035)
chr5 (1-98)||(30371629-30371728)
chr5 (1-88)||(19281022-19281109)
chr5 (1-88)||(43261896-43261982)
chr5 (1-98)||(7150412-7150510)
chr5 (1-93)||(7241692-7241785)
chr5 (4-88)||(16981205-16981289)
chr5 (17-88)||(27576443-27576514)
chr5 (28-98)||(10649358-10649428)
chr5 (1-98)||(7887015-7887112)
chr5 (28-88)||(26578164-26578224)
chr5 (1-84)||(19259888-19259974)
chr5 (1-90)||(43148643-43148733)
chr5 (28-84)||(20257799-20257855)
chr5 (26-81)||(34881631-34881686)
chr5 (17-98)||(15570814-15570896)
chr5 (41-81)||(3271526-3271566)
chr5 (48-88)||(11767722-11767762)
chr5 (17-88)||(6445851-6445922)
chr5 (4-82)||(19100721-19100800)
chr5 (2-70)||(1696944-1697013)
chr5 (42-86)||(14211118-14211162)
[»] chr8 (27 HSPs)
chr8 (1-88)||(35580377-35580464)
chr8 (3-88)||(19876131-19876216)
chr8 (1-98)||(11196801-11196896)
chr8 (1-98)||(44100011-44100107)
chr8 (1-98)||(9072626-9072725)
chr8 (1-88)||(2655788-2655877)
chr8 (1-98)||(11725591-11725688)
chr8 (1-93)||(4808878-4808971)
chr8 (1-98)||(9619434-9619533)
chr8 (1-98)||(42448104-42448203)
chr8 (1-93)||(33895995-33896089)
chr8 (1-91)||(43192423-43192513)
chr8 (1-79)||(11464098-11464178)
chr8 (2-98)||(17949156-17949253)
chr8 (5-98)||(43890205-43890300)
chr8 (1-88)||(44577955-44578043)
chr8 (38-88)||(14907039-14907089)
chr8 (28-81)||(32724594-32724647)
chr8 (1-98)||(9498676-9498777)
chr8 (1-88)||(34611723-34611811)
chr8 (26-70)||(15597269-15597313)
chr8 (39-70)||(39153261-39153292)
chr8 (1-70)||(37565956-37566026)
chr8 (26-87)||(17427321-17427382)
chr8 (48-88)||(18733940-18733980)
chr8 (17-69)||(33298794-33298846)
chr8 (38-66)||(44414194-44414222)
[»] chr7 (34 HSPs)
chr7 (1-88)||(1485334-1485421)
chr7 (1-98)||(433769-433867)
chr7 (1-98)||(23425449-23425546)
chr7 (1-93)||(26492272-26492365)
chr7 (1-98)||(48207804-48207901)
chr7 (1-88)||(1448907-1448994)
chr7 (1-88)||(45199109-45199196)
chr7 (1-88)||(35667309-35667396)
chr7 (1-98)||(22927947-22928045)
chr7 (2-88)||(42067139-42067225)
chr7 (1-93)||(2843306-2843397)
chr7 (1-88)||(35496252-35496340)
chr7 (5-98)||(46821916-46822011)
chr7 (1-98)||(42311182-42311280)
chr7 (11-88)||(20116495-20116572)
chr7 (1-93)||(23085428-23085521)
chr7 (1-95)||(46338958-46339054)
chr7 (1-61)||(17223076-17223136)
chr7 (1-88)||(21266304-21266390)
chr7 (1-98)||(26583616-26583714)
chr7 (1-93)||(31235869-31235962)
chr7 (5-81)||(7740559-7740635)
chr7 (38-85)||(3860867-3860914)
chr7 (1-98)||(42408264-42408362)
chr7 (29-88)||(32684597-32684656)
chr7 (1-88)||(14627956-14628044)
chr7 (1-69)||(23786508-23786575)
chr7 (3-62)||(17499738-17499797)
chr7 (3-62)||(17553417-17553476)
chr7 (39-70)||(32522042-32522073)
chr7 (17-88)||(36143778-36143849)
chr7 (1-59)||(6558817-6558877)
chr7 (28-88)||(1097708-1097768)
chr7 (42-82)||(5546277-5546317)
[»] chr6 (22 HSPs)
chr6 (1-98)||(17237362-17237459)
chr6 (1-88)||(8028195-8028283)
chr6 (8-88)||(33109746-33109826)
chr6 (1-88)||(23947395-23947482)
chr6 (1-88)||(7876121-7876210)
chr6 (1-88)||(7881179-7881268)
chr6 (1-98)||(12652842-12652944)
chr6 (1-98)||(33740655-33740753)
chr6 (1-93)||(4468466-4468558)
chr6 (1-88)||(8196484-8196572)
chr6 (1-88)||(25064147-25064236)
chr6 (1-70)||(12165771-12165840)
chr6 (1-88)||(16419070-16419158)
chr6 (28-98)||(8496867-8496937)
chr6 (1-84)||(35001506-35001590)
chr6 (1-67)||(4088393-4088460)
chr6 (28-82)||(13436705-13436759)
chr6 (38-88)||(17334687-17334737)
chr6 (39-89)||(33543734-33543785)
chr6 (2-98)||(10228581-10228678)
chr6 (1-98)||(34489150-34489250)
chr6 (50-98)||(28635249-28635297)
[»] scaffold0146 (1 HSPs)
scaffold0146 (1-88)||(16397-16487)
[»] scaffold0495 (1 HSPs)
scaffold0495 (2-98)||(5300-5397)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-82)||(453851-453891)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 257 - 421
Target Start/End: Original strand, 6913471 - 6913646
Alignment:
Q  257 cgttgagaaacaacatagatgagtttggatctgaatcaagtcttcaatatgatgg-----------aatttccttgcttatataactgttaatattagcc 345  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||           ||||||||| ||||||||||||||||||||||||    
T  6913471 cgttgagaaacaacatagatgggtttggatctgaatcaagtcttcaatatgatggaatttcaatggaatttccttacttatataactgttaatattagcc 6913570  T
Q  346 atcggtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttgaatttggaatcataaatg 421  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6913571 atcagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggatttggaatcataaatg 6913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 6913249 - 6913437
Alignment:
Q  26 agaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgataataaacttatgacatggtatatgatg 125  Q
    |||||||| ||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  6913249 agaaaaaacctcgatctatgtgaaaatcacctatctagattgaaacatagagaaagagatgaaaaggggtgataataaactaatgacatggtatatgatg 6913348  T
Q  126 aaccgtgatannnnnnnnnnnnnnnnnnnnnaatatagaaaaaggtttttctaacataacatttcgaaaaatgctaggtttgatttttgttg 217  Q
    ||| ||||||                     ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  6913349 aacggtgata---tttttttccaatttttttaatatagaaaaaggtttttctaacataacatttagagaaatgctaggtttgatttttgttg 6913437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29503459 - 29503372
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||| ||||||| ||||||| ||||||||||| |||||    
T  29503459 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcaattatttagattgaaatatagagaaaaatatgaa 29503372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4172564 - 4172466
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||||||||||||||| ||||||| | ||||||||||||||| | |||||||    
T  4172564 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagatggatgat 4172466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 50611495 - 50611592
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||| |||||||| |||||||| | | ||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  50611495 cacacttagatgatgaaatcacaaagaaaaaaacctagatctatatgaaaatcacttatttagattgaaatatagagaaaaagatgaagaggggtgat 50611592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 25631603 - 25631702
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||   || ||||||||||||||||||||||||| ||||||| | ||||||||||||| | |||||||||    
T  25631603 ccacacttagatgatgaaatcacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatggagagggatgat 25631702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 38855114 - 38855212
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||| |||||||| ||||||||  ||| ||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||| ||||    
T  38855114 cacacttagatgatgaaatcacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgatatagagagaaaaagatgaagaggggtgat 38855212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 2342489 - 2342391
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa-tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| | | ||| ||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  2342489 ccacacttagatgatgaaatcacaaagaaaaaaatatagatatatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagagggttgat 2342391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39917474 - 39917571
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| ||||||||  ||||||| || ||||||||||||||||||||||||| ||||||  | ||||||||| ||||| | |||||||    
T  39917474 ccacacttagatgatgaaatcacaaggaaaaaacctagatctatgtgaaaatcacttatttagattgaattagagagaaaaatatgaagatggatgat 39917571  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 46934639 - 46934542
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| ||||||   |||||||| || ||||||||||||||||||||||||| ||||||| | ||||| ||||||||| |||| ||||    
T  46934639 ccacacttagatgatgaaatcaacaagaaaaaacctggatctatgtgaaaatcacttatttagattgaaatagagagagaaagatgaagaggggtgat 46934542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4178562 - 4178474
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat-ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||  || ||| ||| ||||||||||||||||| ||||||| | |||||||||||||||    
T  4178562 ccacacttagatgatgaaatcacaaagaaaaaaagctagatttatctgaaaatcacttatttagattgaaatagagagaaaaagatgaa 4178474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25162433 - 25162346
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  25162433 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaa-tcacttatttagattgaaatagagagaaaaagatgaa 25162346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36906119 - 36906031
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| |||||||| | |  |||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  36906119 ccacacttagatgatgaaattacaaagaaaaaaacctaaatctatgtgaaaatcacttatttatattgaaataaagagaaaaagatgaa 36906031  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38440655 - 38440739
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagat 85  Q
    |||||||| ||| || |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  38440655 ccacactttgatcatgaaatcaaaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagat 38440739  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 44907475 - 44907574
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||| ||| ||||||||   || |||||||||||||||||||| |||| ||||||| | ||||||||||||||| |||| ||||    
T  44907475 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttgtttagattgaaataaagagaaaaagatgaagaggggtgat 44907574  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32607466 - 32607372
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | |||||||| |||||| ||||    
T  32607466 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaatgatgaagaggg 32607372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14464507 - 14464407
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctc---gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatga 97  Q
    ||||||||||| ||| |||||||| ||||||||   |   ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| |||    
T  14464507 ccacacttagaagatgaaatcacaaagaaaaaaaaacttagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaataggggtga 14464408  T
Q  98 t 98  Q
    |    
T  14464407 t 14464407  T

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Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 35499306 - 35499371
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||    
T  35499306 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggg 35499371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 17237802 - 17237712
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat---ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||    ||  |||||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  17237802 ccacacttagatgatgaaatcacaaagaaaaaaaaacctaaatctatgtgaaaatcacttatttagattgaaatagagagaaacagatgaa 17237712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 3850560 - 3850630
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  3850560 aaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 3850630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 49552301 - 49552398
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||| ||||||||| |||||||| |||||||| || |||  |||||||| ||||||||||| ||||||| | ||| |||| |||||| |||| ||||    
T  49552301 ccacatttagatgatgaaatcacaaagaaaaaacctagattaatgtgaaattcacttatttagattgaaatagagaaaaaatgatgaagaggggtgat 49552398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 12116063 - 12115993
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||| ||||||||||||||||||| ||||||| | |||| |||||||||| || ||||||    
T  12116063 aaaaaacctagatctttgtgaaaatcacttatttagattgaaataaagaggaaaagatgaagagagatgat 12115993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30648796 - 30648858
Alignment:
Q  1 ccacacttagatgataaaatcacagag-aaaaaatctcgatctatgtgaaaatcacttattta 62  Q
    ||||||||||||||| |||||||| || |||||| || ||||||||||||| |||||||||||    
T  30648796 ccacacttagatgatgaaatcacaaagaaaaaaaactagatctatgtgaaagtcacttattta 30648858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 36735277 - 36735327
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||||||||||| ||||||| ||| ||||| |||||||||    
T  36735277 aaaatcacttatttaaattgaaatatagagagaaaaatgaagagggatgat 36735327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 46178558 - 46178476
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaat-cacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||  |||||||| || ||||||||||||||  |||||||||| ||||||  | ||||||||||||||| |||||||||    
T  46178558 aaatcacgaagaaaaaacctagatctatgtgaaaaagcacttatttagattgaattagagagaaaaagatgaagagggatgat 46178476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 37169203 - 37169140
Alignment:
Q  26 agaaaaaatctcgatctatgtg-aaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||  | |||||||||| ||||    
T  37169203 agaaaaaatctagatctatgtgaaaaatcacttatttatattgaattagagagaaaaaggtgaa 37169140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42719514 - 42719436
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||||||||||||| || ||||| |   |||| || ||||||  ||||||||||||||||||||||||| | |||||||||    
T  42719514 ccacacttagatgatgaactcacata---aaaacctagatctacatgaaaatcacttatttaaattgaaatagagagaaaaa 42719436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 20987942 - 20987983
Alignment:
Q  29 aaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||| |||||| ||| |||||||||||||||||||||||||    
T  20987942 aaaaaactcgatatatttgaaaatcacttatttaaattgaaa 20987983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 31794039 - 31793997
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||    
T  31794039 gatctatgtgaaaatcacttatttagattgaa--atagagaaaaa 31793997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 52116154 - 52116207
Alignment:
Q  29 aaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||| || ||| ||||||||||||||||||||||||| ||||| || ||||||    
T  52116154 aaaaaacttgatatatgtgaaaatcacttatttaaattaaaacaaagggaaaaa 52116207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 22802971 - 22802931
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||||| | |||||||||||||||    
T  22802971 aaaatcacttatttagattgaaatagagagaaaaagatgaa 22802931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 47042208 - 47042236
Alignment:
Q  42 tatgtgaaaatcacttatttaaattgaaa 70  Q
    |||||||||||||||||||||||||||||    
T  47042208 tatgtgaaaatcacttatttaaattgaaa 47042236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 39384676 - 39384587
Alignment:
Q  329 aactgttaatattagccatcggtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttgaatttggaatcataa 418  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  39384676 aactgttaaaattagccataagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattggaatcataa 39384587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 32913245 - 32913148
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| ||||    
T  32913245 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttaaattgaaatatagagaaaaggatcaagaggggtgat 32913148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40660009 - 40660094
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  40660009 ccacacttagatgatgaaatcacaaagaaaaaatctagatctatgtgaaaatcacttatttagattgaa--atagagaaaaagatgaa 40660094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3725184 - 3725087
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||| ||| |||||||| ||||||||||  ||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  3725184 ccacacttagacgatgaaatcacaaagaaaaaatcaagatctatgtgaaaatcacttatttatattgaaatagagagaaaaagatgaagaggaatgat 3725087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4192842 - 4192745
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| ||  || ||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  4192842 ccacacttagatgatgaaatcacaaagaaaaaacctaaatatatgtgaaaatcacttatttagattgaaatatagagaaaaagatgaagaggggtgat 4192745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 27477150 - 27477061
Alignment:
Q  9 agatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  27477150 agatgatgaaatcacaaagaaaaaatctagatctatgtgaaaattacttatttagattgaaatatagagaaaaagatgaagaggggtgat 27477061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21570484 - 21570583
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| | ||||||  ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  21570484 ccacacttagatgatgaaatcacaaaaaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaatatagagaaaaagatgaagaggggtgat 21570583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 34598991 - 34598904
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| | |||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  34598991 ccacacttagatgatgaaatcacaaaaaaaaaaactagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 34598904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 3270306 - 3270395
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaa 90  Q
    ||||||||||||||| |||||||| | |||||| || ||||||||||||||||||||||||| ||||||| | | |||||||||||||||    
T  3270306 ccacacttagatgatgaaatcacaaaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaaaagaaaaagatgaaaa 3270395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8805870 - 8805783
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||| ||||||| |||||||| |||||||| || |||| |||||||||||||||||||||||||||| | ||||||||| |||||    
T  8805870 ccacactcagatgatgaaatcacaaagaaaaaacctagatccatgtgaaaatcacttatttaaattgaaataaagagaaaaatatgaa 8805783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26025487 - 26025574
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||| ||||| |||||||| |||||||| || |||||||||||||| |||||||||| ||||||| | |||||||||||||||    
T  26025487 ccacacttacatgatgaaatcacaaagaaaaaacctagatctatgtgaaaaccacttatttagattgaaatagagagaaaaagatgaa 26025574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6173636 - 6173538
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||| |||||| |||||||| |||||||| | | ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  6173636 ccacacttcgatgatgaaatcacaaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 6173538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 45128208 - 45128110
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  45128208 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 45128110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 40626105 - 40626202
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||  | |||||||||||||||| |||||||| ||||||| | ||||||||||| ||| |||| ||||    
T  40626105 ccacacttagatgatgaaatcacaaagaaaaaacgtagatctatgtgaaaatcccttatttagattgaaatagagagaaaaagacgaagaggggtgat 40626202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 8971708 - 8971803
Alignment:
Q  5 acttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaa--acatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||| ||  | | ||||||||||||||| |||||||||    
T  8971708 acttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttagattaaaataaagagagaaaaagatgaagagggatgat 8971803  T

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Target: chr2; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22421739 - 22421659
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||| ||||||||||| ||||||| | ||||||||    
T  22421739 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaa 22421659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30420682 - 30420583
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  30420682 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 30420583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 36234012 - 36233911
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa----tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatg 96  Q
    ||||||||||||||| |||| ||| ||||||||    ||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||    
T  36234012 ccacacttagatgatgaaattacaaagaaaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtg 36233913  T
Q  97 at 98  Q
    ||    
T  36233912 at 36233911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32680658 - 32680747
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||   || ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  32680658 ccacacttagatgatgaaatcacaaagaaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 32680747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41431032 - 41430934
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaa-atctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||| | || ||||||||| ||| | ||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  41431032 ccacacttagatgatgaaatcacaaagaaaaacacctagatctatgtaaaagtgacttatttagattgaaatatagagaaaaagatgaagaggggtgat 41430934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2808549 - 2808645
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||  || ||||||||||||||||||||||||| | ||||| | ||||||| ||||||| |||| ||||    
T  2808549 ccacacttagatgatgaaatcacaaagaaaaac-ctagatctatgtgaaaatcacttatttagactgaaatagagagaaatagatgaagaggggtgat 2808645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7015788 - 7015872
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagat 85  Q
    ||||||||||||||| ||||||||  ||||||| ||  |||||||||||||||| ||||||| ||||||| | ||||||||||||    
T  7015788 ccacacttagatgatgaaatcacaaggaaaaaacctaaatctatgtgaaaatcaattatttagattgaaataaagagaaaaagat 7015872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 31581808 - 31581884
Alignment:
Q  12 tgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  31581808 tgatgaaatcaaaaagaaaaaaactagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 31581884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 27249256 - 27249326
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  27249256 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 27249326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 39641943 - 39642024
Alignment:
Q  9 agatgataaaatcac--agagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||| |||||||  ||| |||||| || ||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  39641943 agatgatgaaatcacgaagaaaaaaaacctagatctatgtgaaaatcatttatttaaattgaaatagagagaaaaagatgaa 39642024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 41712842 - 41712932
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaa 90  Q
    ||||||||||||||  ||||||||||||||||| | |  |||||||||||||||||||||||| ||| ||| | |||||||| ||||||||    
T  41712842 ccacacttagatgaggaaatcacagagaaaaaaacctaaatctatgtgaaaatcacttatttagattaaaatagagagaaaatgatgaaaa 41712932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9986419 - 9986491
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat----ctcgatctatgtgaaaatcacttatttaaattgaa 69  Q
    ||||||||||||||| |||||||| |||||||||    || ||||||||||||||||||||||||| ||||||    
T  9986419 ccacacttagatgatgaaatcacaaagaaaaaataaacctagatctatgtgaaaatcacttatttagattgaa 9986491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 20047159 - 20047252
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| ||||||||  ||||||| | |  |||||||| ||| ||||||||||| ||||||| | ||||||||||||||| ||||    
T  20047159 ccacacttagatgatgaaatcacaatgaaaaaaacctaaatctatgtaaaagtcacttatttagattgaaaaagagagaaaaagatgaataggg 20047252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 27949399 - 27949339
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||| || ||||||||||||||||||||||||| ||||||||| || ||||| ||||||    
T  27949399 aaaaaacctagatctatgtgaaaatcacttatttagattgaaacagagcgaaaaggatgaa 27949339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32197872 - 32197959
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||  |||||||| |||||||| ||  || ||||  ||||||| ||||||| ||||||| | |||||||||||||||    
T  32197872 ccacacttagatgacgaaatcacaaagaaaaaacctaaatttatgcaaaaatcatttatttatattgaaataaagagaaaaagatgaa 32197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 42949691 - 42949620
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagag-aaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | |||| ||||||||||| |||| ||||    
T  42949691 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaaagatgaagaggggtgat 42949620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3269188 - 3269252
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaa 63  Q
    ||||||||||||||| |||||||| | ||||||   || ||||||||||||||||||||||||||    
T  3269188 ccacacttagatgatgaaatcacaaaaaaaaaaaacctagatctatgtgaaaatcacttatttaa 3269252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3269747 - 3269811
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaa 63  Q
    ||||||||||||||| |||||||| | ||||||   || ||||||||||||||||||||||||||    
T  3269747 ccacacttagatgatgaaatcacaaaaaaaaaaaacctagatctatgtgaaaatcacttatttaa 3269811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 4228136 - 4228048
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatc--tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||||| |||||||| ||||||||    | |||||||||| |||||||||||||| ||||||| | ||| ||||| |||||    
T  4228136 cacacttagatgatgaaatcacaaagaaaaaaaacatagatctatgtgtaaatcacttatttatattgaaataaagataaaaatatgaa 4228048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 36323846 - 36323801
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttattta 62  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  36323846 aaatcacagagaaaaaacctaaatctatgtgaaaatcacttattta 36323801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 39384726 - 39384685
Alignment:
Q  258 gttgagaaacaacatagatgagtttggatctgaatcaagtct 299  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  39384726 gttgagaaacaacatggatgagtttagatctgaatcaagtct 39384685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 459390 - 459449
Alignment:
Q  39 atctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||||| ||||| | |||||||| |||||| |||| ||||    
T  459390 atctatgtgaaaatcgcttatttaaaatgaaatagagagaaaaggatgaagaggggtgat 459449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25087041 - 25086986
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcact 56  Q
    ||||||||||||||| |||||| | | |||||| || |||||||||||||||||||    
T  25087041 ccacacttagatgatgaaatcaaaaataaaaaacctagatctatgtgaaaatcact 25086986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 1415521 - 1415479
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||| ||| | |||||||||||||||||||||||||||    
T  1415521 aaaaaatcttgatatgtgtgaaaatcacttatttaaattgaaa 1415479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 18695024 - 18694970
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||||||  ||||||||| ||||||||||||||| ||||||| | |||||||||    
T  18695024 aaaaaatcgtgatctatgtaaaaatcacttatttagattgaaatagagagaaaaa 18694970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 37994220 - 37994188
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaa 70  Q
    |||||||||||||||||||||||||||| ||||    
T  37994220 gatctatgtgaaaatcacttatttaaatcgaaa 37994188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 201450 - 201534
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatg 86  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  201450 cacacttagatgatgaaatcacaaagaaaaaatctagatctatgtgaaaatcacttatttagattgaaatatagagaaaaagatg 201534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14545523 - 14545436
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  14545523 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatatagagaaaaagatgaa 14545436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 51871867 - 51871770
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  51871867 ccacacttagatgatgaaatcacaaagaaaaaagctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 51871770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3871412 - 3871320
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||||||| ||||||||  | ||||||||||||||||||||||||| |||||||   ||||| ||||||||||||||    
T  3871412 ccacacttagatgatgaaatcacaaagaaaaaacttagatctatgtgaaaatcacttatttagattgaaattgagagagaaagatgaaaaggg 3871320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 28035143 - 28035055
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  28035143 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 28035055  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30818423 - 30818510
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| | |||||| || ||| ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  30818423 ccacacttagatgatgaaatcacaaaaaaaaaaactagatttatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 30818510  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 5701263 - 5701163
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat---ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatga 97  Q
    ||||||||||||||| |||| ||| ||||||||    || ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||    
T  5701263 ccacacttagatgatgaaattacaaagaaaaaaaaacctagatctatgtgaaaatcacttatttaaattgaaataaagagaaaaagatgaagaggggtga 5701164  T
Q  98 t 98  Q
    |    
T  5701163 t 5701163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34519136 - 34519054
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaag 83  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||    
T  34519136 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaag 34519054  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 51868722 - 51868820
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  51868722 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 51868820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20266306 - 20266218
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat-ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| ||||||||  || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  20266306 ccacacttagatgatgaaattacaaagaaaaaaagctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 20266218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9919393 - 9919295
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||| | |||||||| |||||||| | | ||||||||| ||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  9919393 ccacacttagatggtgaaatcacaaagaaaaaaacatagatctatgtaaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 9919295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11453939 - 11453850
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaa--acatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||| ||||||  | | |||||||||||||||    
T  11453939 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaaccacttatttagattgaaatagagagagaaaaagatgaa 11453850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7997793 - 7997703
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat---ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| ||||||||    || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  7997793 ccacacttagatgatgaaattacaaagaaaaaaaaacctagatctatgtgaaaatcacttatttatattgaaataaagagaaaaagatgaa 7997703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 25406361 - 25406449
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||  |||||||| |||||||| | | ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  25406361 ccacacttagatgacgaaatcacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 25406449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27872742 - 27872655
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||||||  ||||||  ||||||||  | ||||||||||||||||||||||||| ||||||| | || ||||||||||||    
T  27872742 ccacacttagatgatgcaatcacgaagaaaaaacttagatctatgtgaaaatcacttatttagattgaaatagagcgaaaaagatgaa 27872655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38520611 - 38520698
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||| |||||||||| |||||||  ||||||||  | ||||||||||||||||||||||||| || |||| | |||||||||||||||    
T  38520611 ccactcttagatgatgaaatcacgaagaaaaaacatagatctatgtgaaaatcacttatttagatcgaaatagagagaaaaagatgaa 38520698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 45426143 - 45426229
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaa 90  Q
    ||||||||||||||| ||||||||   ||||||  | ||||||||||||||||||||||||| ||| ||| | |||||||||||||||||    
T  45426143 ccacacttagatgatgaaatcaca---aaaaaacttagatctatgtgaaaatcacttatttagatttaaatagagagaaaaagatgaaaa 45426229  T

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Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35584695 - 35584786
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat----ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||| ||||||| ||| ||||||||     || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  35584695 ccacacttagattataaaattacaaagaaaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 35584786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 50272221 - 50272315
Alignment:
Q  5 acttagatgataaaatcacagagaaaaaatctc-gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||| ||| |||||||| |||||||| ||  ||||||||||||||| ||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  50272221 acttagaagatgaaatcacaaagaaaaaaacttagatctatgtgaaaattacttatttagattgaaataaagagaaaaagatgaataggggtgat 50272315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19723337 - 19723268
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaa 69  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||||||||||||||| ||||||    
T  19723337 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaa 19723268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 25728064 - 25728124
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  25728064 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 25728124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5324635 - 5324722
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| || |||||  |  || || |||||||||||||||||| ||||||| | |||||||||||||||    
T  5324635 ccacacttagatgatgaaatcacaaaggaaaaacttaaatttacgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 5324722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9172494 - 9172394
Alignment:
Q  1 ccacacttagatgataaaatcacagaga---aaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatga 97  Q
    |||||||||||||||||||||||| | |   ||||| || ||||||||||||| ||||||||||| ||||||| | ||| ||||| ||||| |||| |||    
T  9172494 ccacacttagatgataaaatcacacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagaaaaaaatatgaagaggggtga 9172395  T
Q  98 t 98  Q
    |    
T  9172394 t 9172394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9180476 - 9180376
Alignment:
Q  1 ccacacttagatgataaaatcacagaga---aaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatga 97  Q
    |||||||||||||||||||||||| | |   ||||| || ||||||||||||| ||||||||||| ||||||| | ||| ||||| ||||| |||| |||    
T  9180476 ccacacttagatgataaaatcacacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagaaaaaaatatgaagaggggtga 9180377  T
Q  98 t 98  Q
    |    
T  9180376 t 9180376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 18569425 - 18569475
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  18569425 gatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 18569475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 19716013 - 19716067
Alignment:
Q  39 atctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||    
T  19716013 atctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggg 19716067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33291495 - 33291565
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||| |||||||| |||||||| | | ||| ||||||||||||||||||||| |||||||    
T  33291495 ccacacttagatgatgaaatcacaaagaaaaaaacatagatttatgtgaaaatcacttatttatattgaaa 33291565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 40646692 - 40646604
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||||| |||| ||| ||||||||   || |||||| |||||||||||||||||| ||||||| | | |||||||||||||    
T  40646692 cacacttagatgatgaaattacaaagaaaaaaaacctagatctacgtgaaaatcacttatttagattgaaataaatagaaaaagatgaa 40646604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 50166176 - 50166261
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagat 85  Q
    ||||||||||||||| |||||||| |||||||| | |  |||||||||||| ||||||||||| ||||||| | | ||||||||||    
T  50166176 ccacacttagatgatgaaatcacatagaaaaaaacctaaatctatgtgaaattcacttatttagattgaaatagatagaaaaagat 50166261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 30879041 - 30878981
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||||||||||||| ||| ||| | ||||||||||||||| || ||||||    
T  30879041 gatctatgtgaaaatcacttatttagattaaaataaagagaaaaagatgaagagagatgat 30878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 7312192 - 7312263
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||  |||||||| || |||||| |||||||||| |||||||| |||||| | |||||||||||||||    
T  7312192 aaatcacgaagaaaaaacctagatctacgtgaaaatcatttatttaatttgaaatagagagaaaaagatgaa 7312263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40881089 - 40881178
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||| || | ||||||   || |||||| |||||||||||| ||||| ||||||| | |||||||||||||||    
T  40881089 ccacacttagatgatgaaatctcaaaaaaaaaaaacctagatctaagtgaaaatcactcatttagattgaaatagagagaaaaagatgaa 40881178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50148378 - 50148278
Alignment:
Q  1 ccacacttagatgataaaatcacagag---aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatga 97  Q
    ||||||||||| ||| |||| ||| ||   |||||| || ||||||||||||||||||||||||| ||| ||| | |||||||| |||||| | ||||||    
T  50148378 ccacacttagaagatgaaattacaaagaaaaaaaaacctagatctatgtgaaaatcacttatttagattaaaataaagagaaaaggatgaagatggatga 50148279  T
Q  98 t 98  Q
    |    
T  50148278 t 50148278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 15397390 - 15397309
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||| ||||||   || ||||||||||||||||||||| ||| ||| |||||||| || | ||||| |||||||    
T  15397390 aaatcacagagacaaaatccaaatttatgtgaaaatcacttatttatattaaaatatagagaacaaaacgaaaatggatgat 15397309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31836811 - 31836748
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttattta 62  Q
    ||||||||||||||| |||| ||| ||||||||   || |||||||||||||||||||||||||    
T  31836811 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttattta 31836748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7342726 - 7342656
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||| |||||||| |||||||| | | |||||| || ||| ||||||||||| |||||||    
T  7342726 ccacacttagatgatgaaatcacaaagaaaaaaacatagatctacgtaaaagtcacttatttagattgaaa 7342656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44637425 - 44637356
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||| ||||||||  |||||||| |||| |||  | |||||| |||||||||||||||||| |||||||    
T  44637425 ccacatttagatgacgaaatcacaaagaagaaacttagatctacgtgaaaatcacttatttagattgaaa 44637356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 39987346 - 39987306
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| || |||||||||||||||    
T  39987346 aaaatcacttatttagattgaatcagagagaaaaagatgaa 39987306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8719 - 8622
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||| ||||    
T  8719 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagataaaaagatgaaaaggggtgat 8622  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 31381749 - 31381846
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||  | ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||    
T  31381749 ccacacttagatgatgaaatcacaaagaaaaaacttagatctatgtgaaaatcacttatttaaattgaaaaagagagaaaaagatgagaaggggtgat 31381846  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8009438 - 8009524
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  8009438 ccacacttagatgatgaaatcacaaagaaaaaa-ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 8009524  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 51317997 - 51317910
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  51317997 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 51317910  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34024514 - 34024611
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||| ||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  34024514 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaataacttatttagattgaaatagagagaaaaagatgaagaggggtgat 34024611  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37188671 - 37188757
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||| ||||| |||||||| |||||||| || ||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  37188671 ccacacttaaatgatgaaatcacaaagaaaaaa-ctagatatatgtgaaaatcacttatttagattgaaatatagagaaaaagatgaa 37188757  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 50766586 - 50766684
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctc-gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||| ||| |||||||| ||  ||||||||||||||||| ||||||| ||||||| | ||||||||||||||| |||||||||    
T  50766586 ccacacttagatgatgaaattacaaagaaaaaaacttagatctatgtgaaaatcatttatttagattgaaataaagagaaaaagatgaagagggatgat 50766684  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38706787 - 38706875
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| | |  |||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  38706787 ccacacttagatgatgaaatcacaaagaaaaaaacctaaatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 38706875  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4643870 - 4643777
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||||||| ||||||||  ||| ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| ||||    
T  4643870 ccacacttagatgatgaaatcacaaagaaaaaaaatctagatctatgtgaaa-tcacttatttagattgaaatagagagaaaaagatgaagaggg 4643777  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10389831 - 10389918
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| |  ||||||| || ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  10389831 ccacacttagatgatgaaatcaaaaggaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 10389918  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 32952826 - 32952911
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||||  |||||||| |||||||| || |||||||||||||| ||||||||||| |||||| | |||||||||||||||    
T  32952826 cacacttagatgacgaaatcacaaagaaaaaa-ctagatctatgtgaaaaacacttatttaatttgaaatagagagaaaaagatgaa 32952911  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 1531920 - 1531820
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagaga-aaaagatgaaaagggatga 97  Q
    ||||||||||||||| |||||||| ||||||||  ||| ||||||||||||||||||||||||| ||||||| | ||||| ||||||| || |||| |||    
T  1531920 ccacacttagatgatgaaatcacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagagaaaagataaagaggggtga 1531821  T
Q  98 t 98  Q
    |    
T  1531820 t 1531820  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 21090158 - 21090077
Alignment:
Q  7 ttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||| |||||||  |||||||| ||  |||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  21090158 ttagatgatgaaatcacgaagaaaaaacctaaatctatgtgaaaatcacttatttatattgaaatagagagaaaaagatgaa 21090077  T

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Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 43444405 - 43444317
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| |||||||| | | ||| ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  43444405 ccacacttagatgatgaaattacaaagaaaaaaacctagatatatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 43444317  T

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Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 56194613 - 56194523
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat---ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||    || ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  56194613 ccacacttagatgatgaaatcacaaagaaaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 56194523  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9645626 - 9645725
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgata 99  Q
    ||||||||||||||| ||||| || |||||||| | | ||||||||||||| ||||||||||| ||||||| | ||| ||||||||||| |||| |||||    
T  9645626 ccacacttagatgatgaaatcgcaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagacaaaaagatgaagaggggtgata 9645725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10359624 - 10359711
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||  |||||||| || ||| ||||| ||||||||||||||| || |||| | |||||||||||||||    
T  10359624 ccacacttagatgatgaaatcacgaagaaaaaacctagatatatgttaaaatcacttatttagatcgaaatagagagaaaaagatgaa 10359711  T

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Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2115664 - 2115753
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| ||||||||   ||  |||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  2115664 ccacacttagatgatgaaattacaaagaaaaaaaacctaaatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 2115753  T

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Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 53616727 - 53616816
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  53616727 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaacgatgaa 53616816  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 868174 - 868106
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| ||||||||| |||||||    
T  868174 ccacacttagatgatgaaatcacaaagaaaaa-tctagatctatgtgaaaataacttatttagattgaaa 868106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35261203 - 35261110
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacataga-gaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||||||  |||||||| ||  |||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||    
T  35261203 ccacacttagatgatcaaatcacgaagaaaaaacctaaatctatgtgaaaatcacttatttagattgcaataaagaggaaaaagatgaagaggg 35261110  T

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Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 47416858 - 47416798
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  47416858 gatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 47416798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 9528955 - 9529053
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatc--tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||| |||||||| ||||||||    |  |||||||||||||||||||||||| ||||||| | |||||||||||| || |||| ||||    
T  9528955 cacacttagatgatgaaatcacaaagaaaaaaaacataaatctatgtgaaaatcacttatttagattgaaataaagagaaaaagataaagaggggtgat 9529053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25273895 - 25273811
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat----ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    ||||||||||||||| |||||||| ||||||||     || ||||||||||||||||||||||||| ||||||| | ||||||||    
T  25273895 ccacacttagatgatgaaatcacaaagaaaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaa 25273811  T

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Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29965647 - 29965565
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    ||||||||||||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | ||||||||    
T  29965647 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaa 29965565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9283923 - 9283825
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||| ||| | |||||| | | ||||||||| ||||||||||||||| ||||||| | |||||||| |||||| |||| ||||    
T  9283923 ccacacttagatgatgaaattacaaataaaaaaacctagatctatgtaaaaatcacttatttagattgaaataaagagaaaacgatgaagaggggtgat 9283825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14183815 - 14183729
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctc-gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatg 86  Q
    ||||||||||||| | |||||||| |||||||| ||  ||||  ||||||||||||||||||| ||||||| | |||||||||||||    
T  14183815 ccacacttagatggtgaaatcacaaagaaaaaaacttagatccttgtgaaaatcacttatttagattgaaatagagagaaaaagatg 14183729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 27593953 - 27594008
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||| || |||||||| ||||||| ||||||||||||||||| ||||    
T  27593953 gatctatgtgaaactcgcttatttagattgaaatatagagaaaaagatgaagaggg 27594008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 35351254 - 35351325
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||  |||||||| || |||||||||||| |||||||||||||||||||| | || ||||| ||||||    
T  35351254 aaatcacgtagaaaaaacctagatctatgtgaatatcacttatttaaattgaaataaagcgaaaaggatgaa 35351325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6972822 - 6972733
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc--tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||    | ||||||||| ||| ||||||||||| ||||||| | ||| |||||||||||    
T  6972822 ccacacttagatgatgaaatcacaaagaaaaaaaacatggatctatgtaaaagtcacttatttagattgaaatacagataaaaagatgaa 6972733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12265467 - 12265369
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaa-tcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||| |||||| ||||||||  ||| |||| || |||||||||||||| ||||||||||| ||||||| |  || ||||||||||| |||| ||||    
T  12265467 ccacactcagatgacaaaatcacgtagagaaaacctagatctatgtgaaaaatcacttatttagattgaaatagggataaaaagatgaagaggggtgat 12265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 20569236 - 20569166
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||||||| ||||||| ||||||| | ||||||||| ||||| |||| ||||    
T  20569236 aaaaaacctagatctatgtgaaaatcatttatttagattgaaataaagagaaaaaaatgaagaggggtgat 20569166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 43154126 - 43154195
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | |||| |||||||||| |||| ||||    
T  43154126 aaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagag-aaaagatgaagaggggtgat 43154195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 49680521 - 49680456
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    |||||| || |||| |||||||||||||||||||  ||||||| | ||||||||||||||| ||||    
T  49680521 aaaaaacctagatccatgtgaaaatcacttatttggattgaaataaagagaaaaagatgaagaggg 49680456  T

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Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 46991235 - 46991287
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaa 80  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||| | |||||||    
T  46991235 aaaaaatctagatctatgtgaaaatcactcatttagattgaaatagagagaaa 46991287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 1931795 - 1931854
Alignment:
Q  3 acacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttattta 62  Q
    ||||||||||||| ||||||||  ||||||| || ||||| ||||||||| |||||||||    
T  1931795 acacttagatgatgaaatcacaatgaaaaaacctagatctttgtgaaaataacttattta 1931854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 49072860 - 49072923
Alignment:
Q  26 agaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaa 89  Q
    ||||||||| |  ||||||||||||||||||||| || ||||||| | ||||||||| ||||||    
T  49072860 agaaaaaatataaatctatgtgaaaatcacttatatagattgaaataaagagaaaaatatgaaa 49072923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 2624482 - 2624440
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    |||||| || ||||||||||||||||||||||||| |||||||    
T  2624482 aaaaaacctagatctatgtgaaaatcacttatttagattgaaa 2624440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 5333656 - 5333701
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| ||||||| | ||||||||||||||| ||||    
T  5333656 aaaatcacttatttatattgaaatagagagaaaaagatgaagaggg 5333701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 35965079 - 35965140
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaa-tcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||| || |||||||||||||| ||||||||| | ||||||| | |||||||||||||||    
T  35965079 aaaaaacctagatctatgtgaaaaatcacttattcagattgaaatagagagaaaaagatgaa 35965140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 1008265 - 1008221
Alignment:
Q  42 tatgtgaaaatcacttatttaaattgaaacatagagaaaaagatg 86  Q
    ||||||||||||||||||||| ||| ||| | |||||||||||||    
T  1008265 tatgtgaaaatcacttatttagattaaaatagagagaaaaagatg 1008221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 5333584 - 5333624
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||||| | |||||||||||||||    
T  5333584 aaaatcacttatttatattgaaatagagagaaaaagatgaa 5333624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 21554902 - 21554946
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttattt 61  Q
    |||||||| |||||| |||| ||| ||||||||||||||||||||    
T  21554902 aaatcacaaagaaaatatctagatttatgtgaaaatcacttattt 21554946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 36194665 - 36194637
Alignment:
Q  42 tatgtgaaaatcacttatttaaattgaaa 70  Q
    |||||||||||||||||||||||||||||    
T  36194665 tatgtgaaaatcacttatttaaattgaaa 36194637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 40601282 - 40601214
Alignment:
Q  258 gttgagaaacaacatagatgagtttggatctgaatcaagtcttcaatatgatggaatttccttgcttat 326  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  40601282 gttgagaaacaacatagatgagtttggatctaaatcaagtcttcaataagatggaatttccttgcttat 40601214  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 28235586 - 28235490
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| || |||| | | ||||||||||||| |||| ||||    
T  28235586 cacacttagatgatgaaatcacaaagaaaaaatctagatctatgtgaaaatcacttatttagatcgaaatagaaagaaaaagatgaagaggggtgat 28235490  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 18677542 - 18677641
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||   || ||||||||||||||||||||||||| ||| ||| | ||||||||||||||| |||||||||    
T  18677542 ccacacttagatgatgaaatcacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattaaaatagagagaaaaagatgaagagggatgat 18677641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30298210 - 30298130
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||    
T  30298210 ccacacttagatgatgaaatcataaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatatagagaaaa 30298130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 781387 - 781304
Alignment:
Q  5 acttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||| |||||||| |||||||  || ||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  781387 acttagatgatgaaatcacaaagaaaaaccctagatctatctgaaaatcacttatttagattgaaatatagagaaaaagatgaa 781304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21060359 - 21060446
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| | |||||  |||||||| ||  |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  21060359 ccacacttagatgatgacatcacgaagaaaaaacctacatctatgtgaaaatcacttatttagattgaaatatagagaaaaagatgaa 21060446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27751928 - 27751853
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacataga 76  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| |||||    
T  27751928 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttatattgaaatataga 27751853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35475414 - 35475501
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||||||||    
T  35475414 ccacacgtaaatgatgaaatcacaaagaaaaaatctagatctatgtgaaaatcacttatttagattgaaatatagataacaagatgaa 35475501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2057915 - 2058013
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||| | |||||||| | | ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  2057915 ccacacttagatgatgaaatcataaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 2058013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7246961 - 7246868
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| ||||    
T  7246961 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggg 7246868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 36344568 - 36344664
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||||||| ||||| ||||||||  | |||| |||||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  36344568 ccacacttagatgataaa-tcacaaagaaaaaacttagatccatgtgaaaataacttatttagattgaaatatagagaaaaagatgaagaggggtgat 36344664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27266936 - 27267035
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||   || ||||||||||||||||||||||||| ||||||| | ||||||||| ||||| |||| ||||    
T  27266936 ccacacttagatgatgaaatcacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaatatgaagaggggtgat 27267035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30371728 - 30371629
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  30371728 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 30371629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 19281022 - 19281109
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| || ||| | ||||||| ||||||||||| ||||||| | |||||||||||||||    
T  19281022 ccacacttagatgatgaaatcacaaagaaaaaacctagatatgtgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 19281109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43261896 - 43261982
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||||||||||||||| || ||||  || ||||||||||||||||||||||||| ||||||| | ||| |||||||||||    
T  43261896 ccacacttagatgataaaatcacaaaggaaaac-ctagatctatgtgaaaatcacttatttagattgaaatagagataaaaagatgaa 43261982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7150412 - 7150510
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctc-gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| ||| |||| |||||||| ||  ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  7150412 ccacacttagatgatgaaagcacaaagaaaaaaacttagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 7150510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7241785 - 7241692
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||| ||||||||| |||||||| |||||||| | | ||||||||||||| ||||||||||| ||||||| | ||||||||||||||| ||||    
T  7241785 ccacaattagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggg 7241692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 16981289 - 16981205
Alignment:
Q  4 cacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||| |||||||| |||||||| || ||| |||||| |||||||||||||| ||||||| | ||||||||| |||||    
T  16981289 cacttagatgatgaaatcacaaagaaaaaacctagatatatgtgtaaatcacttatttagattgaaatagagagaaaaatatgaa 16981205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 27576443 - 27576514
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||| ||||||| | |||||||| ||||||    
T  27576443 aaatcacaaagaaaaaatctagatctatgtgaatatcacttatttacattgaaatagagagaaaaggatgaa 27576514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 10649428 - 10649358
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  10649428 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 10649358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7887015 - 7887112
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||| | ||||||||  | ||| ||||||||||||||||||||| ||| ||| | |||| |||||| ||| |||||||||    
T  7887015 ccacacttagatgatgaaatcaaaaagaaaaaacatagatttatgtgaaaatcacttatttagattaaaatagagaggaaaagacgaagagggatgat 7887112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 26578224 - 26578164
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  26578224 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 26578164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 19259888 - 19259974
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc--tcgatctatgtgaaaa-tcacttatttaaattgaaacatagagaaaaaga 84  Q
    ||||||||||||||| |||||||||||||||||    | |||||||||||||| ||||||||||| ||||||| | |||||||||||    
T  19259888 ccacacttagatgatgaaatcacagagaaaaaaaacttagatctatgtgaaaaatcacttatttagattgaaatagagagaaaaaga 19259974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43148733 - 43148643
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa-tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaa 90  Q
    ||||||||||||||| |||||||| |||||||| |||  || ||||||||| ||||||||||| || |||| | |||||||| ||||||||    
T  43148733 ccacacttagatgatgaaatcacaaagaaaaaaatctaaatatatgtgaaagtcacttatttagatcgaaatagagagaaaaggatgaaaa 43148643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 20257799 - 20257855
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaaga 84  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||    
T  20257799 aaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 20257855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 34881686 - 34881631
Alignment:
Q  26 agaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    |||||||| || ||||||||||||||||||||||||| ||||||| | ||||||||    
T  34881686 agaaaaaaactagatctatgtgaaaatcacttatttagattgaaatagagagaaaa 34881631  T

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Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 15570896 - 15570814
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaa-tcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||| |||||||| ||  ||||||||||||| |||  |||||| ||||||  ||||||||||||||||| |||||||||    
T  15570896 aaatcacaaagaaaaaacctacatctatgtgaaaaatcaaatatttagattgaattatagagaaaaagatgaagagggatgat 15570814  T

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Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 3271526 - 3271566
Alignment:
Q  41 ctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  3271526 ctatgtgaaaatcacttatttagattgaaacagagagaaaa 3271566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 11767762 - 11767722
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  11767762 aaaatcacttatttagattgaaatatagagaaaaagatgaa 11767722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 6445922 - 6445851
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||  |||||||| || ||||||||| ||||||||||||||||||| | | | |||||||| ||||||    
T  6445922 aaatcacgaagaaaaaacctagatctatgtaaaaatcacttatttaaattaagatagagagaaaacgatgaa 6445851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 19100721 - 19100800
Alignment:
Q  4 cacttagatgataaaatcacagagaaaaaa-tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    |||||||| || ||||||||| |||||||| |||  || ||||  ||||||||||||||||||||||| | |||||||||    
T  19100721 cacttagacgacaaaatcacaaagaaaaaaatctaaatttatgcaaaaatcacttatttaaattgaaatagagagaaaaa 19100800  T

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Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 1696944 - 1697013
Alignment:
Q  2 cacacttagatgataaaatcacagagaa-aaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    |||||||||| ||  | |||||| |||| ||||| | ||||||||||||||||||||||||| |||||||    
T  1696944 cacacttagacgaagagatcacaaagaataaaatatagatctatgtgaaaatcacttatttagattgaaa 1697013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 14211162 - 14211118
Alignment:
Q  42 tatgtgaaaatcacttatttaaattgaaacatagagaaaaagatg 86  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||    
T  14211162 tatgtgaaaatcacttatttagattgaaagaaagggaaaaagatg 14211118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35580464 - 35580377
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||  |||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  35580464 ccacacttagatgatgaaatcacgaagaaaaaacctagatctatgtgaaaatcacttatttaaattgaaatagagagaaaaagatgaa 35580377  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 19876216 - 19876131
Alignment:
Q  3 acacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  19876216 acacttagatgatgaaatcacaaagaaaaaaccttgatctatgtgaaaatcacttatttagattgaaatattgagaaaaagatgaa 19876131  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11196896 - 11196801
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||  ||||||||||||||||| | |||||||    
T  11196896 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaa--atagagaaaaagatgaagatggatgat 11196801  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 44100011 - 44100107
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||||||| ||||| ||||||||  | ||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  44100011 ccacacttagatgataaa-tcacaaagaaaaaacttagatctatgtgaaaataacttatttagattgaaatatagagaaaaagatgaagaggggtgat 44100107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9072725 - 9072626
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||  ||| ||| ||||||||| ||||||||||||||||||| | ||||||||||||||| |||| ||||    
T  9072725 ccacacttagatgatgaaatcacaaagaaaaaaaatctagatttatgtgaaagtcacttatttaaattgaaatagagagaaaaagatgaagaggggtgat 9072626  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2655877 - 2655788
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| ||||||||  ||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  2655877 ccacacttagatgatgaaattacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 2655788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11725688 - 11725591
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||| | |||||||| || |||||||||||||| |||||||||| ||||||| | ||||||||||| ||| |||| ||||    
T  11725688 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaaacacttatttagattgaaataaagagaaaaagacgaagaggggtgat 11725591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4808971 - 4808878
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat-ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||| ||| ||||||||  || ||||||||||||||||||||||||| ||||||| | ||| ||||||||||| ||||    
T  4808971 ccacacttagatgatgaaattacaaagaaaaaaagctagatctatgtgaaaatcacttatttacattgaaataaagaaaaaaagatgaagaggg 4808878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9619434 - 9619533
Alignment:
Q  1 ccacacttagatgataaaatcaca--gagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| |||||||| |||| |||  || |||||||||  |||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  9619434 ccacacgtagatgatgaaattacaatgaaaaaaaatctaaatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 9619533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 42448104 - 42448203
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaa--aaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||  ||| || ||||||| || |||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  42448104 ccacacttagatgatgaaatcacaaagaaacaaaacctagatctatatgtaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 42448203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33896089 - 33895995
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||||||| ||||||||   || ||||||||||||| ||||||||||| ||| ||| | ||||||||||||||| ||||    
T  33896089 ccacacttagatgatgaaatcacaaagaaaaaaaacctagatctatgtgaaagtcacttatttagatttaaatagagagaaaaagatgaagaggg 33895995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43192423 - 43192513
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaag 91  Q
    ||||||||||||||| |||||||  |||||||| || ||||||||| |||| |||||||||| ||||||| | |||||||| ||| |||||    
T  43192423 ccacacttagatgatgaaatcacgaagaaaaaacctagatctatgtaaaaaccacttatttagattgaaatagagagaaaatgataaaaag 43192513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11464178 - 11464098
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaa 79  Q
    ||||||||||||||| |||| ||| ||||||||  ||| ||||||||||||||||||||||| ||||||||| | ||||||    
T  11464178 ccacacttagatgatgaaattacaaagaaaaaaaatctagatctatgtgaaaatcacttattcaaattgaaataaagagaa 11464098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 17949253 - 17949156
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaa-tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||||||||| |||||||| | |||||| ||  |||||||||||||||| |||||||| ||||||| | |||||||||| |||| |||| ||||    
T  17949253 cacacttagatgatgaaatcacaaataaaaaaatcaagatctatgtgaaaatcgcttatttagattgaaatagagagaaaaaggtgaagaggggtgat 17949156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 43890205 - 43890300
Alignment:
Q  5 acttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||| |||| ||| ||||||||  ||| ||||||||| ||||||||||||||| ||||||  | ||||||||||||||| |||| ||||    
T  43890205 acttagatgatgaaattacaaagaaaaaaaatctagatctatgtcaaaatcacttatttagattgaattaaagagaaaaagatgaagaggggtgat 43890300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 44578043 - 44577955
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| |||||||| | | |||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  44578043 ccacacttagatgatgaaattacaaagaaaaaaacctagatctatgtgtaaatcacttagttagattgaaatagagagaaaaagatgaa 44577955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 14907039 - 14907089
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  14907039 gatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 14907089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 32724594 - 32724647
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||    
T  32724594 aaaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagaaaa 32724647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9498676 - 9498777
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat----ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatg 96  Q
    ||||||||||||||| |||| ||| ||||||||     ||  |||||||||||||||||||||||| ||||||| | ||| ||||||||||| |||| ||    
T  9498676 ccacacttagatgatgaaattacaaagaaaaaaaaaacctaaatctatgtgaaaatcacttatttagattgaaataaagataaaaagatgaagaggggtg 9498775  T
Q  97 at 98  Q
    ||    
T  9498776 at 9498777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 34611811 - 34611723
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| | | ||| ||||||||||||||||||||| | ||||| | | ||||||| |||||    
T  34611811 ccacacttagatgatgaaatcacaaagaaaaaaacctagatttatgtgaaaatcacttatttagactgaaatagaaagaaaaatatgaa 34611723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 15597269 - 15597313
Alignment:
Q  26 agaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    |||||||| || ||||||||||||||||||||||||| |||||||    
T  15597269 agaaaaaacctagatctatgtgaaaatcacttatttagattgaaa 15597313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 39153261 - 39153292
Alignment:
Q  39 atctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||||||||||||||||||||    
T  39153261 atctatgtgaaaatcacttatttaaattgaaa 39153292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37565956 - 37566026
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||| ||||| || |||||||| | |  |||||||||||||||| ||||||| |||||||    
T  37565956 ccacacttagatgatgaaatctcaaagaaaaaaacctaaatctatgtgaaaatcaattatttagattgaaa 37566026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 17427321 - 17427382
Alignment:
Q  26 agaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatga 87  Q
    |||||||| || ||||||| |||||| |||||||||| | ||||| | ||||||||||||||    
T  17427321 agaaaaaacctagatctatttgaaaagcacttatttacactgaaatagagagaaaaagatga 17427382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 18733980 - 18733940
Alignment:
Q  48 aaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||| ||||||||||||||| | |||||||||||||||    
T  18733980 aaaatcaattatttaaattgaaatagagagaaaaagatgaa 18733940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 33298846 - 33298794
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaa 69  Q
    |||||||| ||  |||| || ||||||||||||||||||||||||| ||||||    
T  33298846 aaatcacaaaggtaaaacctagatctatgtgaaaatcacttatttagattgaa 33298794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 44414194 - 44414222
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaatt 66  Q
    |||||||||||||||||||||||||||||    
T  44414194 gatctatgtgaaaatcacttatttaaatt 44414222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1485334 - 1485421
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  1485334 ccacacttagatgatgaaatcacaaagaaaaaatctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 1485421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 433769 - 433867
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaa-tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| ||| ||||||||||||| ||| ||||||| ||||||| | |||||||||||||||||||||||||    
T  433769 ccacacttagatgatgaaatcacaaagaaaaaaatctagatctatgtgaaagtcatttatttagattgaaatagagagaaaaagatgaaaagggatgat 433867  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23425449 - 23425546
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||| ||||| |||||||| |||||||| || ||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  23425449 ccacacttaaatgatgaaatcacaaagaaaaaacctagatctatgtaaaaatcacttatttagattgaaatatagagaaaaagatgaagaggggtgat 23425546  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26492365 - 26492272
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat-ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||||||| ||||||||  || ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  26492365 ccacacttagatgatgaaatcacaaagaaaaaaaactagatctatgtgaaaatcacttatttaaattgaaatagagagaaaaagatgaagaggg 26492272  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 48207901 - 48207804
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||  | ||||||||||||||||||||||||| ||||||| || |||||||||||||| |||| ||||    
T  48207901 ccacacttagatgatgaaatcacaaagaaaaaacatagatctatgtgaaaatcacttatttagattgaaatattgagaaaaagatgaagaggggtgat 48207804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1448907 - 1448994
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  1448907 ccacacttagatgatgaaatcacaaataaaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagaaagagatgaa 1448994  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 45199109 - 45199196
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||  | ||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  45199109 ccacacttagatgatgaaatcacaaagaaaaaacttagatctatatgaaaatcacttatttaaattaaaatatagagaaaaagatgaa 45199196  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35667309 - 35667396
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| | ||||||||| |||||    
T  35667309 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaatatgaa 35667396  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 22927947 - 22928045
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat-ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| ||||||||  || ||||| ||||||| ||||||||||| ||||||| | |||||||||||||||||||| ||||    
T  22927947 ccacacttagatgatgaaatcacaaagaaaaaaaactagatctgtgtgaaagtcacttatttagattgaaatagagagaaaaagatgaaaaggggtgat 22928045  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 42067139 - 42067225
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||||||||| |||||| | |||||||||||  |||||||||||||||||||||||| ||||||| ||||| || ||||||||    
T  42067139 cacacttagatgatgaaatcagaaagaaaaaatctatatctatgtgaaaatcacttatttagattgaaatatagataacaagatgaa 42067225  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2843306 - 2843397
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||| |||| ||| | |||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||    
T  2843306 ccacacttagatgatgaaattacaaa-aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggg 2843397  T

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Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35496252 - 35496340
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||||||||||| ||| ||||||| | |||||||||||||||    
T  35496252 ccacacttagatgatgaaatcacaaagaaaaaaacctagatctatgtgaaaatcacttaattagattgaaatagagagaaaaagatgaa 35496340  T

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Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 46822011 - 46821916
Alignment:
Q  5 acttagatgataaaatcacagagaaaaaa--tctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||| |||| ||| ||||||||  ||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  46822011 acttagatgatgaaattacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 46821916  T

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Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 42311280 - 42311182
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||| ||||| |||||||| |||||||| | | |||||||||||| |||||||||||| ||||||| | |||||||| |||||| |||||||||    
T  42311280 ccacacttaaatgatgaaatcacaaagaaaaaaacctagatctatgtgaatatcacttatttagattgaaatagagagaaaatgatgaagagggatgat 42311182  T

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Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 20116572 - 20116495
Alignment:
Q  11 atgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| | | |||||||||||||    
T  20116572 atgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagatagaaaaagatgaa 20116495  T

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Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23085521 - 23085428
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    |||||||||||||||||||||||| |||||||| | | ||||||||||||| ||| ||||||| ||||||| | | ||||||||||||| ||||    
T  23085521 ccacacttagatgataaaatcacaaagaaaaaaacctagatctatgtgaaagtcaattatttagattgaaatagaaagaaaaagatgaagaggg 23085428  T

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Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 46339054 - 46338958
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggat 95  Q
    ||||||||| ||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||    
T  46339054 ccacacttaaatgatgaaattacaaagaaaaaaaagctagatctatgtgaaaatcacttatttacattgaaataaagagaaaaagatgaagagggat 46338958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17223076 - 17223136
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttattt 61  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||    
T  17223076 ccacacttagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttattt 17223136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 21266390 - 21266304
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| | ||||||   || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  21266390 ccacacttagatgatgaaatcaaaaagaaaacc-ctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 21266304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26583714 - 26583616
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| | | ||| ||| ||||||||||||||||| ||||||| | ||| ||||||||||| |||| ||||    
T  26583714 ccacacttagatgatgaaatcacaaagaaaaaaacctagatatatatgaaaatcacttatttagattgaaatagagataaaaagatgaagaggggtgat 26583616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31235869 - 31235962
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaa-tcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||||||||  |||||||  ||| |||| || |||||||||||||| ||||||||||| ||||||| | ||||||||||||||| ||||    
T  31235869 ccacacttagatgacgaaatcacgtagagaaaacctagatctatgtgaaaaatcacttatttagattgaaatagagagaaaaagatgaagaggg 31235962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 7740635 - 7740559
Alignment:
Q  5 acttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaa 81  Q
    |||||||| || |||||||| |||||||||||  |||||||||||||| | ||||||||||||||| ||||| ||||    
T  7740635 acttagattatgaaatcacaaagaaaaaatctaaatctatgtgaaaataatttatttaaattgaaatatagaaaaaa 7740559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 3860914 - 3860867
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagat 85  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  3860914 gatctatgtgaaaatcacttatttatattgaaacaaagagaaaaagat 3860867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 42408362 - 42408264
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||| ||||| |||||||| |||||||| | | |||| ||||||||| || ||||||| ||||||| | ||||||||||||||| | |||||||    
T  42408362 ccacacttaaatgatgaaatcacaaagaaaaaaacctagatccatgtgaaaaacaattatttagattgaaataaagagaaaaagatgaagatggatgat 42408264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 32684656 - 32684597
Alignment:
Q  29 aaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||| || ||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  32684656 aaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaacgatgaa 32684597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 14627956 - 14628044
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||||||  ||||||| | |  || ||||||||||||||||||||| ||||||  | ||| |||||||||||    
T  14627956 ccacacttagatgatgaaatcacaaggaaaaaaacctatatttatgtgaaaatcacttatttagattgaattagagaaaaaaagatgaa 14628044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23786575 - 23786508
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaa 69  Q
    ||||||||||||||| || ||||| ||||||||| | ||| | ||||||||||||||||||| ||||||    
T  23786575 ccacacttagatgatgaa-tcacaaagaaaaaatttagatatgtgtgaaaatcacttatttagattgaa 23786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 17499738 - 17499797
Alignment:
Q  3 acacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttattta 62  Q
    ||||||||||||| ||||||||  ||||||| || ||||| ||||||||| |||||||||    
T  17499738 acacttagatgatgaaatcacaatgaaaaaacctagatctttgtgaaaataacttattta 17499797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 17553476 - 17553417
Alignment:
Q  3 acacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttattta 62  Q
    ||||||||||||| ||||||||  ||||||| || ||||| ||||||||| |||||||||    
T  17553476 acacttagatgatgaaatcacaatgaaaaaacctagatctttgtgaaaataacttattta 17553417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 32522042 - 32522073
Alignment:
Q  39 atctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||||||||||||||||||||    
T  32522042 atctatgtgaaaatcacttatttaaattgaaa 32522073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 36143849 - 36143778
Alignment:
Q  17 aaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||  |||||||| || |||||| ||||||| |||||||||| ||||||  | |||||||||||||||    
T  36143849 aaatcacgaagaaaaaacctagatctacgtgaaaaacacttatttagattgaattagagagaaaaagatgaa 36143778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6558877 - 6558817
Alignment:
Q  1 ccacacttagatgataaaatcacagagaa--aaaatctcgatctatgtgaaaatcacttat 59  Q
    ||||||||||||||| |||||||| ||||  |||| ||  |||||||||||||||||||||    
T  6558877 ccacacttagatgatgaaatcacaaagaagaaaaacctaaatctatgtgaaaatcacttat 6558817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 1097708 - 1097768
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||| || ||||||||| |||| |||||||||||||||||| | | | |||||||||||    
T  1097708 aaaaaaactagatctatgtaaaaaacacttatttaaattgaaatagataaaaaaagatgaa 1097768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 5546317 - 5546277
Alignment:
Q  42 tatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||||||||||||||||||| ||||||| | |||||||||    
T  5546317 tatgtgaaaatcacttatttagattgaaatagagagaaaaa 5546277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 17237362 - 17237459
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||| | |||||||| |||||||| || ||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  17237362 ccacacttagatgctgaaatcacaaagaaaaaacctagatctatgtgaaaataacttatttagattgaaatatagagaaaaagatgaagaggggtgat 17237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8028195 - 8028283
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctc-gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| | |||||||| ||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8028195 ccacacttagatgatgaaatcataaagaaaaaaacttagatctatgtgaaaatcacttatttagattgaaacagagagaaaaagatgaa 8028283  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 33109826 - 33109746
Alignment:
Q  8 tagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    |||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  33109826 tagatgatgaaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 33109746  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23947395 - 23947482
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  23947395 ccacacttagatgatgaaatcaaaaagaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaacgatgaa 23947482  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7876121 - 7876210
Alignment:
Q  1 ccacacttagatgataaaat--cacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||  || ||| ||||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  7876121 ccacacttagatgatgaaattgcaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 7876210  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7881179 - 7881268
Alignment:
Q  1 ccacacttagatgataaaat--cacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| ||||  || ||| ||||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  7881179 ccacacttagatgatgaaattgcaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 7881268  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12652944 - 12652842
Alignment:
Q  1 ccacacttagatgataaaatcacagag-----aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggat 95  Q
    ||||||||||||||| |||||||| ||     ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| |    
T  12652944 ccacacttagatgatgaaatcacaaaggaaaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggt 12652845  T
Q  96 gat 98  Q
    |||    
T  12652844 gat 12652842  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33740655 - 33740753
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||| |||||||| |||||||| | |  |||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  33740655 ccacacttagatgatgaaatcacaaagaaaaaaacctaaatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgat 33740753  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4468558 - 4468466
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaaggg 93  Q
    ||||||||| ||||| |||||||| |||||||| || ||||||| ||||||||||||||||| ||||||| | |||||| |||||||| ||||    
T  4468558 ccacacttatatgatgaaatcacaaagaaaaaacctagatctatatgaaaatcacttatttagattgaaatagagagaacaagatgaagaggg 4468466  T

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Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8196484 - 8196572
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||| ||||| |||||||| |||||||| | | ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  8196484 ccacacttatatgatgaaatcacaaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaa 8196572  T

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Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25064236 - 25064147
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat--ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||| ||| ||||||||   || ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  25064236 ccacacttagatgatgaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaa 25064147  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12165840 - 12165771
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtgaaaatcacttatttaaattgaaa 70  Q
    ||||||||||||||||||| |||| |||||||| ||  |||||||||||||||||||||||| |||||||    
T  12165840 ccacacttagatgataaaaccacaaagaaaaaacctaaatctatgtgaaaatcacttatttagattgaaa 12165771  T

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Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16419158 - 16419070
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctc-gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| |||||||| |   ||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  16419158 ccacacttagatgatgaaatcacaaagaaaaaaacaaagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaa 16419070  T

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Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 8496937 - 8496867
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  8496937 aaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgat 8496867  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 35001590 - 35001506
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaaga 84  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||| ||| ||||||||||| ||| ||| | |||||||||||    
T  35001590 ccacacttagatgatgaaatcacaaagaaaaaaacatagatctatgtaaaagtcacttatttagattaaaatagagagaaaaaga 35001506  T

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Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4088460 - 4088393
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat-ctcgatctatgtgaaaatcacttatttaaattg 67  Q
    ||||||||||||||| |||||| | ||||||||  || ||||||||||||||||||||||||| ||||    
T  4088460 ccacacttagatgatgaaatcaaaaagaaaaaaaactagatctatgtgaaaatcacttatttagattg 4088393  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 13436759 - 13436705
Alignment:
Q  28 aaaaaatctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||||| | ||| ||||||||||||||||||||||||||||| | |||||||||    
T  13436759 aaaaaatatagatttatgtgaaaatcacttatttaaattgaaatagagagaaaaa 13436705  T

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Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 17334737 - 17334687
Alignment:
Q  38 gatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||||||||||||| ||||||| | | |||||||||||||    
T  17334737 gatctatgtgaaaatcacttatttagattgaaataaacagaaaaagatgaa 17334687  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 33543734 - 33543785
Alignment:
Q  39 atctatgtgaaaa-tcacttatttaaattgaaacatagagaaaaagatgaaa 89  Q
    ||||||||||||| | ||||||||| ||||||| ||||||||||||||||||    
T  33543734 atctatgtgaaaaattacttatttagattgaaatatagagaaaaagatgaaa 33543785  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 10228678 - 10228581
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||| ||||| |||||||| |||||||| | | ||| ||||| ||| ||||||||||| ||||||  | ||||| ||||||||| |||| ||||    
T  10228678 cacacttaaatgatgaaatcacaaagaaaaaaacatagatatatgtaaaagtcacttatttagattgaagtagagagagaaagatgaagaggggtgat 10228581  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34489250 - 34489150
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaatctcgatctatgtg-aaaatcacttatt--taaattgaaacatagagaaaaagatgaaaagggatga 97  Q
    |||||||  |||||| |||||||  |||||||| || |||||||||| |||||||||||||  || ||||||  | ||||||||||||||| |||| |||    
T  34489250 ccacactcggatgatgaaatcacgaagaaaaaacctagatctatgtgaaaaatcacttatttatatattgaattagagagaaaaagatgaagaggggtga 34489151  T
Q  98 t 98  Q
    |    
T  34489150 t 34489150  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 28635249 - 28635297
Alignment:
Q  50 aatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    ||||||||||||||||||||| | | ||||||| ||||| |||||||||    
T  28635249 aatcacttatttaaattgaaataaaaagaaaaatatgaagagggatgat 28635297  T

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Target: scaffold0146 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16397 - 16487
Alignment:
Q  1 ccacacttagatgataaaatcacagagaaaaaat---ctcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaa 88  Q
    ||||||||||||||| |||||||| ||||||||    ||  |||||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  16397 ccacacttagatgatgaaatcacaaagaaaaaaaaacctaaatctatgtgaaaatcacttatttagattgaaatagagagaaacagatgaa 16487  T

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Target: scaffold0495 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 5397 - 5300
Alignment:
Q  2 cacacttagatgataaaatcacagagaaaaaatc-tcgatctatgtgaaaatcacttatttaaattgaaacatagagaaaaagatgaaaagggatgat 98  Q
    |||||||| ||||| |||||||| |||||||| | | ||| ||||| ||| ||||||||||| ||||||  | ||||| ||||||||| |||| ||||    
T  5397 cacacttaaatgatgaaatcacaaagaaaaaaacatagatatatgtaaaagtcacttatttagattgaagtagagagagaaagatgaagaggggtgat 5300  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 453891 - 453851
Alignment:
Q  42 tatgtgaaaatcacttatttaaattgaaacatagagaaaaa 82  Q
    ||||||||||||||||||||||||| ||| | |||||||||    
T  453891 tatgtgaaaatcacttatttaaattaaaataaagagaaaaa 453851  T

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