View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_high_6 (Length: 351)
Name: NF13576_high_6
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 23 - 342
Target Start/End: Original strand, 39114757 - 39115074
Alignment:
| Q |
23 |
tggtagacattaaaaattaattgacaatttgaaagagaaagaaacatataggatggtgtgataaatgtgatatatcagagatttaataagaaaagaaata |
122 |
Q |
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| T |
39114757 |
tggtagacattaaaaattaattgacaatttgaaagagaaagaaacat-taagatggtgtgataaatgtgatatatcagagatttaataagaagagaaata |
39114855 |
T |
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| Q |
123 |
aagataatatgacgtgttaaatgagtttatgagaattaagagagtctacatatcattgtactcttcaagtttagatgttttaatgtgtaaatgttaactc |
222 |
Q |
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| T |
39114856 |
aagataatgtgacgtgttaaatgagtttatgagaattaagagagtctacatatcattgtactcttcaagtttagatgttttaatgtgtaaatgttaactc |
39114955 |
T |
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| Q |
223 |
gtgctcttaaaccctaaataaatttaaaagataaagaggatacaaaatactggaagcacatgaataattaaaccacgtgtggtatacaacccaaacagga |
322 |
Q |
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| T |
39114956 |
gtgctcttaaaccctaaataaatttaaaagataaagaggatacaaaataccggaagcacatgtataattaaaccacgtgtggtatacaacccaaacagga |
39115055 |
T |
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| Q |
323 |
ataaaaacatattcttcgac |
342 |
Q |
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| T |
39115056 |
at-aaaacatattattcgac |
39115074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 22865193 - 22865229
Alignment:
| Q |
131 |
atgacgtgttaaatgagtttatgagaattaagagagt |
167 |
Q |
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| T |
22865193 |
atgatgtgttaaatgagtttatgagaataaagagagt |
22865229 |
T |
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