View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_low_1 (Length: 460)
Name: NF13576_low_1
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 2272905 - 2272469
Alignment:
| Q |
11 |
cataggtgcatggaccacattgatcaattaacacagtgaagcaaaatatgggaagcaatacatggaacaaaa---caatgtccatttggaggaaataaat |
107 |
Q |
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| T |
2272905 |
cataggtgcatggaccacattgatcaattaacacagtgaagcaaaatatgggaagcaatacatggaacaaaaaaacaatgtccatttggaggaaataaat |
2272806 |
T |
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| Q |
108 |
aatgttgcagtgaagcacacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacg |
207 |
Q |
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| T |
2272805 |
aatgttgcagtgaagcacacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacg |
2272706 |
T |
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| Q |
208 |
aacattaagtctgtccttaaacattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacat |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272705 |
aacattaagtctgtccttaagcattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacat |
2272606 |
T |
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| Q |
308 |
tcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272605 |
tcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgt |
2272506 |
T |
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| Q |
408 |
gaatccttgagcaaaactttctgatggatcatgaatc |
444 |
Q |
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| T |
2272505 |
gaatccttgagcaaaactttctgatggatcatgaatc |
2272469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
307 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
381 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
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