View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_low_3 (Length: 411)
Name: NF13576_low_3
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 39684131 - 39683753
Alignment:
| Q |
16 |
ataacgaactaattttcaaattcgattagttggaagagacgatctgaaagtgcttcgaataaaataatcttagtatattgaacatagggaaaaccaaaga |
115 |
Q |
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| T |
39684131 |
ataacgaactaattttcaaattcgattagttggaagagacgatctgaaagtgcttcgaataaagtaatcttagtatattgaacatagggaaaaccaaaga |
39684032 |
T |
|
| Q |
116 |
atnnnnnnnnnnnnnttactcaaccaaggcaaagcatctggtgaggtgccaactctttttctttttgtcgaaagattaggagatgttagcaagaatgtct |
215 |
Q |
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| T |
39684031 |
ataaaaatgaaaaaattactcaaccaaggcaaagcatctggtgaggtgccaactctttttctttttgtcgaaagattaggagatgttagcaagaatgtct |
39683932 |
T |
|
| Q |
216 |
ttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaacaatttttggatgatgaa |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39683931 |
ttaaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaacaatttttggatgatgaa |
39683832 |
T |
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| Q |
316 |
tcactttgatgctcacccaaatcctctccatatcttctcctcctttgcctactagcaccggaacatgccctttgttact |
394 |
Q |
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| T |
39683831 |
tcactttgatgctcacccaaatcctctccatatcttctcctcctttgcttactagcaccggaacatgccctttgttact |
39683753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 39689414 - 39689259
Alignment:
| Q |
198 |
atgttagcaagaatgtctttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaa |
297 |
Q |
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||||||||||||||| |||||||| |||| ||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
39689414 |
atgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacaccctgttggtatccatattctttagcagattgttccaacaattcaa |
39689315 |
T |
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| Q |
298 |
caatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttct |
353 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39689314 |
caattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttct |
39689259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 39689241 - 39689206
Alignment:
| Q |
359 |
tttgcctactagcaccggaacatgccctttgttact |
394 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
39689241 |
tttgcctactagcactggaacatgccctttgttact |
39689206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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