View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13576_low_4 (Length: 393)

Name: NF13576_low_4
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13576_low_4
NF13576_low_4
[»] chr5 (8 HSPs)
chr5 (16-375)||(10813966-10814334)
chr5 (38-91)||(19145556-19145609)
chr5 (43-99)||(23270672-23270728)
chr5 (46-97)||(12317303-12317354)
chr5 (46-96)||(25343233-25343283)
chr5 (47-96)||(15931053-15931102)
chr5 (46-91)||(25750764-25750809)
chr5 (46-91)||(27487708-27487753)
[»] chr1 (7 HSPs)
chr1 (16-91)||(16899510-16899585)
chr1 (16-92)||(1095118-1095194)
chr1 (38-91)||(24216977-24217030)
chr1 (39-91)||(52135129-52135181)
chr1 (46-96)||(15059555-15059605)
chr1 (46-96)||(46607804-46607854)
chr1 (46-99)||(4621390-4621443)
[»] chr2 (5 HSPs)
chr2 (38-91)||(18691981-18692034)
chr2 (38-91)||(8192496-8192549)
chr2 (38-88)||(4618830-4618880)
chr2 (46-91)||(4852557-4852602)
chr2 (46-98)||(32845083-32845135)
[»] chr7 (9 HSPs)
chr7 (38-96)||(28646967-28647025)
chr7 (38-91)||(1469115-1469168)
chr7 (38-91)||(21574248-21574301)
chr7 (46-96)||(27312150-27312200)
chr7 (38-91)||(12211680-12211733)
chr7 (38-87)||(22696327-22696376)
chr7 (38-91)||(23330884-23330937)
chr7 (32-86)||(45559209-45559265)
chr7 (39-91)||(9769589-9769641)
[»] chr6 (1 HSPs)
chr6 (46-91)||(8479311-8479356)
[»] chr3 (6 HSPs)
chr3 (38-98)||(4252541-4252601)
chr3 (46-97)||(48977381-48977432)
chr3 (46-96)||(21362937-21362987)
chr3 (46-96)||(40133602-40133652)
chr3 (46-103)||(45529907-45529964)
chr3 (46-98)||(18177040-18177092)
[»] scaffold0068 (1 HSPs)
scaffold0068 (46-96)||(41797-41847)
[»] chr8 (5 HSPs)
chr8 (46-96)||(28193472-28193522)
chr8 (38-88)||(41070767-41070817)
chr8 (46-96)||(42643271-42643321)
chr8 (46-99)||(7558096-7558149)
chr8 (38-91)||(36848894-36848947)
[»] chr4 (3 HSPs)
chr4 (38-91)||(40252297-40252350)
chr4 (44-96)||(5609353-5609405)
chr4 (46-98)||(40059005-40059057)
[»] scaffold0240 (1 HSPs)
scaffold0240 (52-96)||(12913-12957)
[»] scaffold0028 (1 HSPs)
scaffold0028 (38-98)||(27768-27828)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 10813966 - 10814334
Alignment:
Q  16 attggcaccagaggagatcgaacttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaataggttgatagttagaaacttagaa 115  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  10813966 attgacaccagaggggatcaaacttgagatgagcacactccaaaattctaagttaaccactaagccaaccccaaataggtttatagttagaaatttagaa 10814065  T
Q  116 tatgaatcatttgattgagatttgatgattgtgcttgctta-----------atgttatagtaaattctcacaatgtgattaagattggatgatccannn 204  Q
    |||||||||||||||||||||||||||||||||||||||||           |||||||||||||||| |||||||||||||||||||||||||| |       
T  10814066 tatgaatcatttgattgagatttgatgattgtgcttgcttagcgacacaataatgttatagtaaattcccacaatgtgattaagattggatgatctattt 10814165  T
Q  205 nnnnnnnnnnnnnnnacaaaagattggatgttccatgatgatctaatttcgtgttttagattcattttgcaatattgaatcaagtatataccgttcgatt 304  Q
                   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  10814166 tttattttttttt--acaaaagattggatgttccatgatgatctaatttcgtgttttagattcattctgcaatattgaatcaagtatgtaccgttcgatt 10814263  T
Q  305 gagatcgaatggctgaaattggcagaattgtgtgaatactccaacaacaaggaatcaatgagtctagaaag 375  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10814264 gagatcgaatggctgaaattggcagaattgtgtgaatactctaacaacaaggaatcaatgagtctagaaag 10814334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 19145556 - 19145609
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| ||||| ||||||| || |||||| ||||||||||||||||||||||    
T  19145556 cttgagaggagcatactccaagatcccaagtcaaccactaggccaaccccaaat 19145609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 23270672 - 23270728
Alignment:
Q  43 gatgagcacactccaaaattccaagttaaccactaggccaaccccaaataggttgat 99  Q
    |||||||| ||||||| || |||||  |||||||||||||||||||||| |||||||    
T  23270672 gatgagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttgat 23270728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 12317303 - 12317354
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttg 97  Q
    ||||| ||||||| ||||||||  |||||||||||||||||||||| |||||    
T  12317303 gagcaaactccaagattccaagccaaccactaggccaaccccaaatgggttg 12317354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 25343283 - 25343233
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||| ||||    
T  25343283 gagcacaatccaagatttcaagtcaaccactaggccaaccccaaatgggtt 25343233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 15931102 - 15931053
Alignment:
Q  47 agcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    |||| ||||||| || ||||| ||||||||||||||||||||||| ||||    
T  15931102 agcaaactccaagatcccaagctaaccactaggccaaccccaaatgggtt 15931053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 25750764 - 25750809
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||| ||||||| || |||||| ||||||||||||||||||||||    
T  25750764 gagcaaactccaagatcccaagtcaaccactaggccaaccccaaat 25750809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 27487708 - 27487753
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||| |||||||||| |||| | ||||||||||||||||||||||    
T  27487708 gagcaaactccaaaatcccaaatcaaccactaggccaaccccaaat 27487753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 16899585 - 16899510
Alignment:
Q  16 attggcaccagaggagatcgaacttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||||||||||  ||||||| |||||  |||||||||||| ||| ||||| ||||||||||||||||||||||    
T  16899585 attggcaccagagggaatcgaacctgagagcagcacactccaagattacaagtcaaccactaggccaaccccaaat 16899510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 1095118 - 1095194
Alignment:
Q  16 attggcaccagaggagatcgaacttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaata 92  Q
    |||||||||||| || |||||||||||||  || ||||||||| || |||||  ||||||||| |||||||||||||    
T  1095118 attggcaccagaagaaatcgaacttgagagaagaacactccaagatcccaagccaaccactagaccaaccccaaata 1095194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 24217030 - 24216977
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| ||||||||||||| || |||||| |||||||||| |||||||||||    
T  24217030 cttgagaggagcacactccaagatcccaagtcaaccactaggtcaaccccaaat 24216977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 52135181 - 52135129
Alignment:
Q  39 ttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    |||||||||||| ||||||| || |||||| ||||||||| ||||||||||||    
T  52135181 ttgagatgagcaaactccaagatcccaagtcaaccactagaccaaccccaaat 52135129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 15059555 - 15059605
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| ||||||||  |||||||||||||||||||||| ||||    
T  15059555 gagcaaactccaagattccaagccaaccactaggccaaccccaaatgggtt 15059605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 46607854 - 46607804
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| || |||||| |||||||||||||||||||||| ||||    
T  46607854 gagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 46607804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 4621390 - 4621443
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttgat 99  Q
    ||||| ||||||| || |||||  |||||||||||||||||||||| |||||||    
T  4621390 gagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttgat 4621443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 18692034 - 18691981
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  18692034 cttgagatgagcacactccaaaattccaagcaaaccattaggccaaccccaaat 18691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 8192496 - 8192549
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| ||||||||||||| || |||||  ||||||||||||||||||||||    
T  8192496 cttgagaggagcacactccaagatcccaagccaaccactaggccaaccccaaat 8192549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 4618830 - 4618880
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaacccca 88  Q
    ||||||| ||||| ||||||| ||||||||  |||||||||||||||||||    
T  4618830 cttgagaggagcatactccaagattccaagccaaccactaggccaacccca 4618880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 4852602 - 4852557
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||| ||||||| ||||||||| |||||||||| |||||||||||    
T  4852602 gagcaaactccaagattccaagtcaaccactaggtcaaccccaaat 4852557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 32845135 - 32845083
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttga 98  Q
    ||||| ||||||| || ||||| |||| |||||||||||||||||| ||||||    
T  32845135 gagcaaactccaagatcccaagctaactactaggccaaccccaaatgggttga 32845083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 28647025 - 28646967
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    |||||||  |||||||||||| || |||||| || ||||||||||||||||||||||||    
T  28647025 cttgagagaagcacactccaagatcccaagtcaatcactaggccaaccccaaataggtt 28646967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 1469168 - 1469115
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    |||||||||| || ||||||| ||| ||||| ||||||||||||||||||||||    
T  1469168 cttgagatgaacaaactccaagatttcaagtcaaccactaggccaaccccaaat 1469115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 21574248 - 21574301
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| |||||||||||||||| ||||   ||||||||||||||||||||||    
T  21574248 cttgagaggagcacactccaaaatcccaaaccaaccactaggccaaccccaaat 21574301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 27312200 - 27312150
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| || |||||  |||||||||||||||||||||||||||    
T  27312200 gagcaaactccaagatcccaagccaaccactaggccaaccccaaataggtt 27312150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 12211680 - 12211733
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| ||||||||||||| || | |||  ||||||||||||||||||||||    
T  12211680 cttgagaggagcacactccaagatcctaagccaaccactaggccaaccccaaat 12211733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 22696376 - 22696327
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaacccc 87  Q
    ||||||| ||||||||||||| || |||| | ||||||||||||||||||    
T  22696376 cttgagaggagcacactccaagatcccaaatcaaccactaggccaacccc 22696327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 23330884 - 23330937
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| |||||||||| ||||| |||||  ||||||||||| ||||||||||    
T  23330884 cttgagaggagcacactctaaaatcccaagccaaccactaggctaaccccaaat 23330937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 45559265 - 45559209
Alignment:
Q  32 atcgaacttgagatgagcacactccaaaattccaagtta--accactaggccaaccc 86  Q
    |||||||||||||||||||||||||||  |||||||  |  ||||||||||||||||    
T  45559265 atcgaacttgagatgagcacactccaaggttccaagccaataccactaggccaaccc 45559209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 9769641 - 9769589
Alignment:
Q  39 ttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    |||||| ||||||||||||| ||||||| | ||||| ||| ||||||||||||    
T  9769641 ttgagaggagcacactccaagattccaaatcaaccattagcccaaccccaaat 9769589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 8479356 - 8479311
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||    
T  8479356 gagcacactccaagatcccaagtcaaccactaggccaaccccaaat 8479311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4252541 - 4252601
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaataggttga 98  Q
    ||||||| ||||||||||||| ||  ||||  |||||||||||||||||||||| ||||||    
T  4252541 cttgagaggagcacactccaagatctcaagccaaccactaggccaaccccaaatgggttga 4252601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 48977432 - 48977381
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttg 97  Q
    ||||| ||||||| || |||||| |||||||||||||||||||||| |||||    
T  48977432 gagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggttg 48977381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 21362987 - 21362937
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| || |||||| |||||||||||||||||||||| ||||    
T  21362987 gagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 21362937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 40133602 - 40133652
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| |||||||||| |||||  |||||||||||||||||||||| ||||    
T  40133602 gagcaaactccaaaatcccaagccaaccactaggccaaccccaaatgggtt 40133652  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 45529907 - 45529964
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttgatagtt 103  Q
    ||||| ||||||| || |||||  |||||||||||||||||||||| ||||| |||||    
T  45529907 gagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttggtagtt 45529964  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 18177040 - 18177092
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttga 98  Q
    ||||| ||||||| ||  ||||| |||||||||||||||||||||| ||||||    
T  18177040 gagcaaactccaagatctcaagtcaaccactaggccaaccccaaatgggttga 18177092  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 41797 - 41847
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| || |||||| |||||||||||||||||||||| ||||    
T  41797 gagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 41847  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 28193522 - 28193472
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| || |||||  |||||||||||||||||||||||||||    
T  28193522 gagcaaactccaagatcccaagccaaccactaggccaaccccaaataggtt 28193472  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 41070817 - 41070767
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaacccca 88  Q
    |||||||  |||||||||||| || |||||| |||||||||||||||||||    
T  41070817 cttgagagtagcacactccaagatcccaagtcaaccactaggccaacccca 41070767  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 42643271 - 42643321
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||| ||||||| || |||||| |||||||||||||||||||||| ||||    
T  42643271 gagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 42643321  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 7558096 - 7558149
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttgat 99  Q
    ||||| ||||||| || ||||| |||| |||||||||||||||||| |||||||    
T  7558096 gagcaaactccaagatcccaagctaactactaggccaaccccaaatgggttgat 7558149  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 36848894 - 36848947
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    ||||||| ||||| |||||||||  |||||| |||||||| |||||||||||||    
T  36848894 cttgagaggagcaaactccaaaaacccaagtcaaccactatgccaaccccaaat 36848947  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 40252350 - 40252297
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaat 91  Q
    |||||||  |||||||||||| ||||||||| ||| ||||| ||||||||||||    
T  40252350 cttgagagaagcacactccaagattccaagtcaactactagaccaaccccaaat 40252297  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 5609353 - 5609405
Alignment:
Q  44 atgagcacactccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||||| ||||||| || |||||  |||||||||||||||||||||| ||||    
T  5609353 atgagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 5609405  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 40059005 - 40059057
Alignment:
Q  46 gagcacactccaaaattccaagttaaccactaggccaaccccaaataggttga 98  Q
    ||||| ||||||| || |||||  |||||||||||||||||||||| ||||||    
T  40059005 gagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttga 40059057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12913 - 12957
Alignment:
Q  52 actccaaaattccaagttaaccactaggccaaccccaaataggtt 96  Q
    ||||||| || |||||| |||||||||||||| ||||||||||||    
T  12913 actccaagatcccaagtcaaccactaggccaatcccaaataggtt 12957  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 27828 - 27768
Alignment:
Q  38 cttgagatgagcacactccaaaattccaagttaaccactaggccaaccccaaataggttga 98  Q
    ||||||| ||||| |||||||||| ||||   ||||||||| |||||||||||| ||||||    
T  27828 cttgagaggagcaaactccaaaatcccaaaccaaccactagaccaaccccaaatgggttga 27768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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