View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_low_5 (Length: 377)
Name: NF13576_low_5
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 32553855 - 32554196
Alignment:
| Q |
20 |
atcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcac |
119 |
Q |
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| T |
32553855 |
atcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcac |
32553954 |
T |
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| Q |
120 |
tatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagaacaatttgatttctcttctgtgcagcctcatcatgttcaact |
219 |
Q |
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| T |
32553955 |
tatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagagcaatttgatttctcttctgtacagcctcatcatgttcaact |
32554054 |
T |
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| Q |
220 |
tacagcatgttcatctgttgatgggttttcgcagtatcataatccgaatgattcagttgcacctcttatgggagctcccttatcattaccatctgttttt |
319 |
Q |
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| T |
32554055 |
taccgcatgttcatccgttgatgggttttcgcagtatcataatccaaatgattcagttgcacctcttatgggagctcccttatcattaccatctgttttt |
32554154 |
T |
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| Q |
320 |
gaagaggattgcattacttctgtaccttcttatgttcctttg |
361 |
Q |
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| T |
32554155 |
gaagaggattgcattacttctgtaccttcttatgttcctttg |
32554196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 16921253 - 16921324
Alignment:
| Q |
61 |
tatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcactatcaccatcttt |
132 |
Q |
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| T |
16921253 |
tatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttt |
16921324 |
T |
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