View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_low_7 (Length: 346)
Name: NF13576_low_7
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2440634 - 2440299
Alignment:
| Q |
1 |
tgaagttttcttggtgttccgtctttgttcctaaatcctaacccaatcggcctcaggcgcacagagtactaagaatctcctgatgatcaatgttagatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440634 |
tgaagttttcttggtgttccgtctttgttcctaaatcctaacccaatcggcctcaggcgcacagagtactaagaatctcctgatgatcaatgttagatcc |
2440535 |
T |
|
| Q |
101 |
cttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataatttccctgaaatggcaccttcttccctctaacaaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440534 |
cttgccatttcttgcttcaaatgaacactgctcatagttctcaagcctaaacaattgattgataatttccctgaaatggcaccttcttccctctaacaaa |
2440435 |
T |
|
| Q |
201 |
aatattgaatttcatcaaatcattcgtatagttcccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcc |
300 |
Q |
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| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440434 |
actagtgaatttcatcaaatcattcttatagttcccatcttctttagcaagaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcc |
2440335 |
T |
|
| Q |
301 |
tcttttgcaaatgatgtcaattctccccactctctg |
336 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
2440334 |
tcttttgcaaatgatgtcaattctccccaccctctg |
2440299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 36 - 322
Target Start/End: Original strand, 41665264 - 41665554
Alignment:
| Q |
36 |
tcctaacccaatcggcctcaggc--gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctc |
133 |
Q |
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||||||||||||| ||||| ||| ||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||| |
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| T |
41665264 |
tcctaacccaatcagcctcgggcctgcacagagtgctacgaatctcctgatgatcaatgttagagcccttggtctttcttgcttcaaacgaacactgctc |
41665363 |
T |
|
| Q |
134 |
atagttctcaagcctaaacaattgattgataatttccc--tgaaatggcaccttcttccctctaacaaaaatattgaatttcatcaaatcattcgtatag |
231 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||| || |||||||||||| ||||||| |||| |
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| T |
41665364 |
atagttctcaagcccaaacaattgattgataattttctcatgaaatggcaccttcttccctctcacaaaactagtgaatttcatcagatcattctcatag |
41665463 |
T |
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| Q |
232 |
ttcccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaatt |
322 |
Q |
| |
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|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41665464 |
ttcccatcttctttggcagtacccatatatgcatttgcaaagaactctttagctaatgtcgcactagcctcttttgcaaatgatgtcaatt |
41665554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 319
Target Start/End: Original strand, 41656503 - 41656789
Alignment:
| Q |
36 |
tcctaacccaatcggcctcaggc--gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctc |
133 |
Q |
| |
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|||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |
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| T |
41656503 |
tcctaatccaatcggcctcgggcctgcacagagtactaagaatctcctgatgatcaatgttagatccctttgcctttcttgcttcaaatgaacactgctc |
41656602 |
T |
|
| Q |
134 |
atagttctcaagcctaaacaattgattgataatttccc--tgaaatggcaccttcttccctctaacaaaaatattgaatttcatcaaatcattcgtatag |
231 |
Q |
| |
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||||||||| |||| ||||||| |||||||||||| | |||||||||||| |||| ||||| |||||| || |||||||||||||||||||| ||||| |
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| T |
41656603 |
atagttctctagcccaaacaatcgattgataattttctcatgaaatggcaccatcttgcctctgacaaaactagtgaatttcatcaaatcattcttatag |
41656702 |
T |
|
| Q |
232 |
ttcccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtca |
319 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
41656703 |
ttcccatcttctttagcaggacccagatatgcatttgcaaagaactctttagctaatg-ggcactagcctcttttgcaaatgttgtca |
41656789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 41648412 - 41648703
Alignment:
| Q |
36 |
tcctaacccaatcggcctcaggcg--cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctc |
133 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||| |||| || ||| |
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| T |
41648412 |
tcctaacccaatcggcctcgggcctacacagagtactgtgaatctcctgatgatcaatgttagagcccttggtctttcttgtttcaaaggaacactcctc |
41648511 |
T |
|
| Q |
134 |
atagttctcaagcctaaacaattgattgataattt--ccctgaaatggcaccttcttccctctaacaaaaatattgaatttcatcaaatcattcgtatag |
231 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||| | |||||||| |||||||||||||| |||||| || |||||| ||| | ||||||| ||| | |
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| T |
41648512 |
attgttctcaagcccaaacaattgattgataattttatcatgaaatggaaccttcttccctctcacaaaactagtgaattgcattagatcattcttattg |
41648611 |
T |
|
| Q |
232 |
ttcccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattc |
323 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| | || |||||||| ||||| |||| |||||||| ||||| |||||||||| |
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| T |
41648612 |
ttcccatcttctttagtaggaccctgatatgcatttgcagacaattctttagcaaatgttgtacaagcctcttctgcaagctatgtcaattc |
41648703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 41716298 - 41716571
Alignment:
| Q |
36 |
tcctaacccaatcggcctcaggcg--cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctc |
133 |
Q |
| |
|
||||||||||||| ||||| ||| |||| ||||||| |||||||||||||||||| |||||| |||||| | ||||||||||||||||||| || ||| |
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| T |
41716298 |
tcctaacccaatcagcctcgggcctacacaaagtactacgaatctcctgatgatcaacgttagaacccttggcctttcttgcttcaaatgaacacttctc |
41716397 |
T |
|
| Q |
134 |
atagttctcaagcctaaacaattgattgataattt--ccctgaaatggcaccttcttccctctaacaaaaatattgaatttcatcaaatcattcgtatag |
231 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | |||||||| |||||||||||||| |||||| || |||||||||| ||||||| |
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| T |
41716398 |
atagttctcaagcctaaacatttgattgataattttatcatgaaatggaaccttcttccctctgacaaaactagtgaatttcattcgatcattc------ |
41716491 |
T |
|
| Q |
232 |
ttcccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattc |
323 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
41716492 |
------------ttagcaggaccctgatatgcatttgcaaagaactctttagctattgtcgtactagcatcttttgcaaacgatgtcaattc |
41716571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 41706495 - 41706768
Alignment:
| Q |
36 |
tcctaacccaatcggcctcaggcg--cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctc |
133 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||| |||| |||||| |
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|
| T |
41706495 |
tcctaacccaatcggcctcgggcctacacagagtactacgaatctcctgatgatcaatgttagaacccttggcctttcttgcttcaaaggaacactgctc |
41706594 |
T |
|
| Q |
134 |
atagttctcaagcctaaacaattgattgataatttc--cctgaaatggcaccttcttccctctaacaaaaatattgaatttcatcaaatcattcgtatag |
231 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | | |||||||| || ||||||||||| | |||| || |||||||||| |||||| |
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| T |
41706595 |
atagttctcaagcccaaacaattcattgataatattatcatgaaatggaacattcttccctctgataaaactagtgaatttcattcgctcattc------ |
41706688 |
T |
|
| Q |
232 |
ttcccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattc |
323 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
41706689 |
------------ttagcagggccctgatatgcatttgcaaagaactctttagctaatgtcgtactagcatcttttgcaaacgatgtcaattc |
41706768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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