View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13576_low_8 (Length: 337)

Name: NF13576_low_8
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13576_low_8
NF13576_low_8
[»] chr2 (4 HSPs)
chr2 (1-310)||(29747365-29747674)
chr2 (20-148)||(24837425-24837550)
chr2 (1-144)||(38211505-38211645)
chr2 (184-224)||(40565661-40565701)
[»] chr1 (3 HSPs)
chr1 (3-219)||(17762429-17762642)
chr1 (1-149)||(17914491-17914635)
chr1 (5-76)||(23696141-23696212)
[»] chr4 (2 HSPs)
chr4 (31-149)||(12398808-12398924)
chr4 (5-76)||(3329268-3329338)
[»] chr5 (1 HSPs)
chr5 (5-76)||(17303929-17304000)
[»] chr7 (2 HSPs)
chr7 (5-76)||(3737665-3737735)
chr7 (20-76)||(20920122-20920179)
[»] chr6 (3 HSPs)
chr6 (5-87)||(32788367-32788448)
chr6 (13-76)||(8887033-8887095)
chr6 (35-87)||(7172884-7172936)
[»] scaffold0740 (1 HSPs)
scaffold0740 (23-76)||(1209-1263)
[»] chr3 (2 HSPs)
chr3 (1-41)||(8678371-8678411)
chr3 (184-224)||(36120061-36120101)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 29747365 - 29747674
Alignment:
Q  1 ttaagttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacatgatcgctatgata 100  Q
    |||||| | ||||||||| |||||||||||||||||||||  || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  29747365 ttaagtcaaaaagttagcgttgaacaaacaattattatctaagttcattttacggaatggatccgagtggagtaaccccgaatacatgatcgctatgata 29747464  T
Q  101 aaccggctaaattcctatctgaggctagagccggactcctcttgtcgtcgtgaaggttccctttcgggctggacctatccagaataatctggagcttttc 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29747465 aaccggctaaattcttatctgaggctagagccggactcctcttgtcgtcgtgcaggttccctttcgggctggacctatccagaataatctggagcttttc 29747564  T
Q  201 tgagccacaacttaactgattataattatctgaacataattttagtaacatatatctgaaatgtttctgatcataagtgtaagtatatctgattcataac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29747565 tgagccacaacttaactgattataattatctgaacataattttagtaacatatatctgaaatgtctctgatcataagtgtaagtatatctgattcataac 29747664  T
Q  301 tgagtttatt 310  Q
    ||||||||||    
T  29747665 tgagtttatt 29747674  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 24837425 - 24837550
Alignment:
Q  20 ttgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacatgatcgctatgataaaccggctaaattcctatc 119  Q
    ||||||||||||||||| | || || |||||||| |||||||||||||||||||||| ||||||||||  | ||||| || ||||||||||||| |||||    
T  24837425 ttgaacaaacaattattttttgagttcattttacggaatggatccgagtggagtaaccccgaatacat--ttgctataat-aaccggctaaatttctatc 24837521  T
Q  120 tgaggctagagccggactcctcttgtcgt 148  Q
    |||||||||||| ||| ||||||||||||    
T  24837522 tgaggctagagctggaatcctcttgtcgt 24837550  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 38211505 - 38211645
Alignment:
Q  1 ttaagttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacatgatcgctatgata 100  Q
    ||||||||||| |||| | || |||||||||||||||| || || |||||||| |||||||||||| | ||||||| ||||||||||  ||| | ||||     
T  38211505 ttaagttagaatgttatcgtttaacaaacaattattatatgagttcattttacggaatggatccgactagagtaaccccgaatacat--tcgatctgat- 38211601  T
Q  101 aaccggctaaattc-ctatctgaggctagagccggactcctcttg 144  Q
    |||||||||||||| |||||||| |||| |  |||||||||||||    
T  38211602 aaccggctaaattctctatctga-gctataatcggactcctcttg 38211645  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 40565661 - 40565701
Alignment:
Q  184 ataatctggagcttttctgagccacaacttaactgattata 224  Q
    |||||||||||||| |||||||||||||||| || ||||||    
T  40565661 ataatctggagcttgtctgagccacaacttatctaattata 40565701  T

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Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 17762642 - 17762429
Alignment:
Q  3 aagttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacatgatcgctatgataaa 102  Q
    |||||||||||||||  ||||||||||||| ||||| || || ||| |||| ||||||| ||| |||||||||| ||||||||||  ||||| |||||||    
T  17762642 aagttagaaagttagagttgaacaaacaat-attatatgagttcatgttacggaatggacccgggtggagtaaccccgaatacat--tcgctctgataaa 17762546  T
Q  103 ccggctaaattcctatctgaggctagagccggactcctcttgtcgtcgtgaaggttccctttcgggctggacctatccagaataatctggagcttttctg 202  Q
    || |||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||     
T  17762545 ccagctaaattcctatctgaggctagagcccaactcctattgtcgtcgtgaaggttccctttcgggctggacctatccaaaataatcttgagcttttctt 17762446  T
Q  203 agccacaacttaactga 219  Q
    |||||||||||| ||||    
T  17762445 agccacaacttatctga 17762429  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 17914491 - 17914635
Alignment:
Q  1 ttaagttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacatgatcgctatgata 100  Q
    |||||||||| | ||||| || || ||||||| ||||| || || ||||||||  |||||| |||||||||||||| ||||||||||  ||   ||        
T  17914491 ttaagttagacaattagcgttaaataaacaat-attatttgagttcattttacgaaatggacccgagtggagtaaccccgaatacatcctc---atacat 17914586  T
Q  101 aaccggctaaattcctatctgaggctagagccggactcctcttgtcgtc 149  Q
    |||||   |||||||||||||||||||   |||||||||||||||||||    
T  17914587 aaccgatgaaattcctatctgaggctaacaccggactcctcttgtcgtc 17914635  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 23696212 - 23696141
Alignment:
Q  5 gttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatc-cgagtggagtaac 76  Q
    ||||||||||| || |||||||||| |||||||||||  | |||||||  ||||||||| |||||||||||||    
T  23696212 gttagaaagttcgcgttgaacaaac-attattatctggattcattttatggaatggatctcgagtggagtaac 23696141  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 12398808 - 12398924
Alignment:
Q  31 attattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacatgatcgctatgataaaccggctaaattcctatctgaggctagag 130  Q
    ||||||||||| || |||||||| ||||||||  |||||||||||| | ||||||||  ||||| |||||||||  |||||||||||| |||||||||||    
T  12398808 attattatctgagttcattttacagaatggatttgagtggagtaaccctgaatacat--tcgctctgataaaccaactaaattcctatatgaggctagag 12398905  T
Q  131 ccggactcctcttgtcgtc 149  Q
      |||||||||||||||||    
T  12398906 atggactcctcttgtcgtc 12398924  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 3329338 - 3329268
Alignment:
Q  5 gttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaac 76  Q
    ||||||| |||||||||||| ||||||| |||||||| || ||||||||  |||||||||||||||||||||    
T  3329338 gttagaaggttagcattgaataaacaat-attatctgagttcattttacgaaatggatccgagtggagtaac 3329268  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 17304000 - 17303929
Alignment:
Q  5 gttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggat-ccgagtggagtaac 76  Q
    |||||||||||||| |||||||||| || |||||||| || |||||||| |||||||| ||||||||||||||    
T  17304000 gttagaaagttagcgttgaacaaac-ataattatctgagttcattttacggaatggatcccgagtggagtaac 17303929  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 3737735 - 3737665
Alignment:
Q  5 gttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaac 76  Q
    |||||||||||||| ||||||||||| | |||||||| || ||||||||  ||||||| |||||||||||||    
T  3737735 gttagaaagttagcgttgaacaaaca-tcattatctgggttcattttacaaaatggattcgagtggagtaac 3737665  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 20920179 - 20920122
Alignment:
Q  20 ttgaacaaacaattattatctgcgtacattttactgaatggatcc-gagtggagtaac 76  Q
    |||||||||||||| |||||||  |  |||||||||||||||||| ||||||||||||    
T  20920179 ttgaacaaacaatttttatctggattgattttactgaatggatcctgagtggagtaac 20920122  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 32788448 - 32788367
Alignment:
Q  5 gttagaaagttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacat 87  Q
    |||||| ||||||| ||||||||||| | |||||||  || |||||||| |||||||||||||| ||||||| ||||| ||||    
T  32788448 gttagatagttagcgttgaacaaaca-tcattatctaggttcattttacagaatggatccgagtagagtaaccccgaacacat 32788367  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 8887095 - 8887033
Alignment:
Q  13 gttagcattgaacaaacaattattatctgcgtacattttactgaatggatccgagtggagtaac 76  Q
    |||||| |||||||||||| ||||||||| || |||||||| ||||| ||||||||| ||||||    
T  8887095 gttagcgttgaacaaacaa-tattatctgagttcattttacggaatgcatccgagtgaagtaac 8887033  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 7172936 - 7172884
Alignment:
Q  35 ttatctgcgtacattttactgaatggatccgagtggagtaacaccgaatacat 87  Q
    ||||||| || |||||||| ||||| |||||||||||||||| |||| |||||    
T  7172936 ttatctgagttcattttacggaatgcatccgagtggagtaaccccgagtacat 7172884  T

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Target: scaffold0740 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 1209 - 1263
Alignment:
Q  23 aacaaacaattattatctgcgtacattttactgaatggat-ccgagtggagtaac 76  Q
    |||| |||||||||||||| || |||||||| |||||||| ||||||||||||||    
T  1209 aacacacaattattatctgagtgcattttacagaatggatcccgagtggagtaac 1263  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8678371 - 8678411
Alignment:
Q  1 ttaagttagaaagttagcattgaacaaacaattattatctg 41  Q
    ||||||||||| |||||| ||||| ||||||||||||||||    
T  8678371 ttaagttagaatgttagcgttgaataaacaattattatctg 8678411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 36120061 - 36120101
Alignment:
Q  184 ataatctggagcttttctgagccacaacttaactgattata 224  Q
    |||||||||||||| |||||||||||||||| || ||||||    
T  36120061 ataatctggagcttgtctgagccacaacttatctaattata 36120101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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