View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13576_low_9 (Length: 324)
Name: NF13576_low_9
Description: NF13576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13576_low_9 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 35212128 - 35211823
Alignment:
| Q |
19 |
acgatgaacttgcggcattggaaacatggaataacggcaagctttatgagcaagctgtaaatattgaagtgcctatgtttgtacgtttgctccgctacta |
118 |
Q |
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| T |
35212128 |
acgatgaacttgcggcattggaaacatggaataacggcaagctttatgagcaagctgtaaatattgaagtgcctatgtttgtacgtttgctccgctacta |
35212029 |
T |
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| Q |
119 |
tgctggtgagacagaacagtgaaaccaataagacgttcatttctttcttcatttatatactactgctttttggtgatattcgacctgcaatttattcagg |
218 |
Q |
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| T |
35212028 |
tgctggtgagacagaacagtgaaaccaataagacgttcatttctctcttcatttatatactactgatttttggtgatattcgacctgcaatttattcagg |
35211929 |
T |
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| Q |
219 |
ttgggcagataaaatacatggtctcacggttccagctgatgggaattatcatgtacaagtattgcatgaaccaattggggttgcaggacaaatcatacct |
318 |
Q |
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| T |
35211928 |
ttgggcagataaaatacatggtctcacagttccagctgatgggaattatcatgtacaagtattgcatgaaccaattggggttgcaggacaaatcatacct |
35211829 |
T |
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| Q |
319 |
tggaac |
324 |
Q |
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|||||| |
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| T |
35211828 |
tggaac |
35211823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 43999812 - 43999704
Alignment:
| Q |
215 |
caggttgggcagataaaatacatggtctcacggttccagctgatgggaattatcatgtacaagtattgcatgaaccaattggggttgcaggacaaatcat |
314 |
Q |
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| T |
43999812 |
caggttgggcagataaaattcatgggctgacagtcccggctgatggagattatcatgtccagacattgcatgaaccaattggtgtagcaggacaaattat |
43999713 |
T |
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| Q |
315 |
accttggaa |
323 |
Q |
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| T |
43999712 |
accttggaa |
43999704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 26894878 - 26894987
Alignment:
| Q |
215 |
caggttgggcagataaaatacatggtctcacggttccagctgatgggaattatcatgtacaagtattgcatgaaccaattggggttgcaggacaaatcat |
314 |
Q |
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|||||||||||||||| || ||||| ||||| |||||||||||||| |||||||| || |||||| ||||| ||||| ||||| || |||||||| |
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| T |
26894878 |
caggttgggcagataagattcatgggctcacagttccagctgatggaccatatcatgtgcagacattgcacgaaccgattggcgttgctggtcaaatcat |
26894977 |
T |
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| Q |
315 |
accttggaac |
324 |
Q |
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| T |
26894978 |
tccatggaac |
26894987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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