View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13577_low_1 (Length: 634)

Name: NF13577_low_1
Description: NF13577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13577_low_1
NF13577_low_1
[»] chr2 (3 HSPs)
chr2 (19-538)||(36611623-36612140)
chr2 (304-344)||(44605152-44605191)
chr2 (304-340)||(19613630-19613665)
[»] chr4 (4 HSPs)
chr4 (111-187)||(18641448-18641524)
chr4 (460-534)||(18641263-18641337)
chr4 (304-342)||(19230324-19230361)
chr4 (306-344)||(44796975-44797012)
[»] chr1 (1 HSPs)
chr1 (299-330)||(39101208-39101239)
[»] chr8 (3 HSPs)
chr8 (373-423)||(34200980-34201030)
chr8 (304-340)||(3508059-3508094)
chr8 (304-340)||(37225760-37225795)
[»] chr6 (1 HSPs)
chr6 (299-340)||(13689210-13689250)
[»] chr5 (1 HSPs)
chr5 (304-340)||(18607114-18607149)


Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 36611623 - 36612140
Alignment:
Q  19 tacatatctaatgtaaaagcaaaaagtcaaccacctttcacaatccaatatgaaaacaaagatacacacataaagtcaagcatctagtggtgtatctcac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36611623 tacatatctaatgtaaaagcaaaaagtcaaccacctttcacaatccaatatgaaaacaaagatacacacataaagtcaaggatctagtggtgtatctcac 36611722  T
Q  119 cttctcaacccaagcctccttgaattcaacaatgtaaggatgcttaattctcgcaattagagccatctacaaatacaattcccaaaatcaactacaccac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36611723 cttctcaacccaagcctccttgaattcaacaatgtaaggatgcttaattctcgcaattagagccatctacaaatacaattcccaaaatcaactacaccac 36611822  T
Q  219 ttcatattatcaaacaacaaacaagataaacaagctatgaagcacaaacaccaatcactaaacagacactcacacatcatcacatataataatttgagaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36611823 ttcatattatcaaacaacaaacaagataaacaagctatgaagcacaaacaccaatcactaa--agacactcacacatcatcacatataataatttgagaa 36611920  T
Q  319 aataacataatttcaatgtaattacacggtgtcatagacaaacacatcacatcgctgacacgtgtcagacaccgaatacacatttgatcagaagtgtaag 418  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  36611921 aataacataatttcaatataattacacagtgtcatagacaaacacatcacatcaccgacacgtgtcagacaccgaatacacatttgattagaagtgtaag 36612020  T
Q  419 tgatagtatgcaagaaactaccaaaacaaaatccaattactacctcttgatgagcagatcttctacaccgttccgtttgccttgcaagcctaattttctt 518  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36612021 tgatagtaagcaagaaactaacaaaacaaaatccaattactacctcttgatgagcagatcttctacaccgttccgtttgcctagcaagcctaattttctt 36612120  T
Q  519 caacacatatctacaacaac 538  Q
    ||||||||||||||||||||    
T  36612121 caacacatatctacaacaac 36612140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 44605191 - 44605152
Alignment:
Q  304 ataataatttgagaaaataacataatttcaatgtaattaca 344  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  44605191 ataataatttgagaaaataacataa-ttcaatgtaattaca 44605152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 19613665 - 19613630
Alignment:
Q  304 ataataatttgagaaaataacataatttcaatgtaat 340  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19613665 ataataatttgagaaaataacataa-ttcaatgtaat 19613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 18641524 - 18641448
Alignment:
Q  111 tatctcaccttctcaacccaagcctccttgaattcaacaatgtaaggatgcttaattctcgcaattagagccatcta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| |||||||||||    
T  18641524 tatctcaccttctcaacccaagcctccttgaattcaacaatgtaagggtgcctgattcttgcaataagagccatcta 18641448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 534
Target Start/End: Complemental strand, 18641337 - 18641263
Alignment:
Q  460 acctcttgatgagcagatcttctacaccgttccgtttgccttgcaagcctaattttcttcaacacatatctacaa 534  Q
    ||||||||||||||||||||||| || | ||| || || || |||||||| ||||| ||||||||||| ||||||    
T  18641337 acctcttgatgagcagatcttctgcatctttcagtctgtctagcaagcctgatttttttcaacacatacctacaa 18641263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 19230361 - 19230324
Alignment:
Q  304 ataataatttgagaaaataacataatttcaatgtaatta 342  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  19230361 ataataatttgagaaaataacataa-ttcaatgtaatta 19230324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 44797012 - 44796975
Alignment:
Q  306 aataatttgagaaaataacataatttcaatgtaattaca 344  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  44797012 aataatttgagaaaataacataa-ttcaatgtaattaca 44796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 39101239 - 39101208
Alignment:
Q  299 cacatataataatttgagaaaataacataatt 330  Q
    ||||||||||||||||||||||||||||||||    
T  39101239 cacatataataatttgagaaaataacataatt 39101208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 34201030 - 34200980
Alignment:
Q  373 ctgacacgtgtcagacaccgaatacacatttgatcagaagtgtaagtgata 423  Q
    |||||||||||||||||||||| |||  ||||||||||||| | |||||||    
T  34201030 ctgacacgtgtcagacaccgaacacatctttgatcagaagtatcagtgata 34200980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 3508059 - 3508094
Alignment:
Q  304 ataataatttgagaaaataacataatttcaatgtaat 340  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3508059 ataataatttgagaaaataacataa-ttcaatgtaat 3508094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 37225795 - 37225760
Alignment:
Q  304 ataataatttgagaaaataacataatttcaatgtaat 340  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37225795 ataataatttgagaaaataacataa-ttcaatgtaat 37225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 13689250 - 13689210
Alignment:
Q  299 cacatataataatttgagaaaataacataatttcaatgtaat 340  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  13689250 cacagataataatttgagaaaataaca-aatttcaatgtaat 13689210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 18607149 - 18607114
Alignment:
Q  304 ataataatttgagaaaataacataatttcaatgtaat 340  Q
    ||||||||||||||||||||||||| |||||||||||    
T  18607149 ataataatttgagaaaataacataa-ttcaatgtaat 18607114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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