View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13577_low_2 (Length: 292)
Name: NF13577_low_2
Description: NF13577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13577_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 42298087 - 42298351
Alignment:
| Q |
9 |
gagaagaatgacataccttgatgaagcacaaatattcggtcgacaaaaacttaaagaaggtttcattaaatttggccaaatctttgctctaccattgtga |
108 |
Q |
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| T |
42298087 |
gagaagaatgacataccttgatgaagcacaaatattcggtcgacaaaaacttaaagaaggtttcattaaatttggccaaatctttgctctaccattatga |
42298186 |
T |
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| Q |
109 |
aaaagtcaatgttgtcttttctcatttatcccttcatgttttgctcaccattatccatgttcgctctaagggtcccagacatcaggagccactgcagctc |
208 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
42298187 |
aaaagtcaatgttgtcttttctcatttattccttcatgttttgctcaccattatccatgttcgctctaagggtcccagacatcaggagctaatgcagctc |
42298286 |
T |
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| Q |
209 |
cttcgatatgaattaattgaagtcattaactctttcatgtctctaatcatgctcttcgtactaaa |
273 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42298287 |
ctccgatatgaattaattgaagtcattaactctttcatgtctctaatcatgttcttcgtactaaa |
42298351 |
T |
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