View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13578_high_2 (Length: 417)
Name: NF13578_high_2
Description: NF13578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13578_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 33079318 - 33079013
Alignment:
| Q |
10 |
catcatcaggtattaaaattatgcatacatatcttaattccgataaagatatgcatgttcttaatgctagtttacaaacattgaattcaatatgtgtgat |
109 |
Q |
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| T |
33079318 |
catcaccaggtattaaaattatgcatacatatcttaattcctataaagatatgcatgttcttaatgctagtttacaaacattgaattcaatatgtgtgat |
33079219 |
T |
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| Q |
110 |
aggaatatgtttggttaga----------tagttgaagtaagttattcaatggcatccaaaaggcacagtagaattagcatagttatttaggggaggtta |
199 |
Q |
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| T |
33079218 |
atgaatatgtttggttagatagcagggtctagtcgaagtaagttattcaatggcatccaaaaggcacagtagaattagcatagttatttaggggaggtta |
33079119 |
T |
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| Q |
200 |
gtcagagaagagagggcgtggtgtgaacgattattctc-nnnnnnnagcaatgaatgattattctcttgttcagcagttatttatggagcttttatattc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079118 |
gtcagagaagagagggcgtggtgtgaacgattattctcttttttttaccaatgaatgattattctcttgttcagcagttatttatggagcttttatattc |
33079019 |
T |
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| Q |
299 |
atgttc |
304 |
Q |
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|||||| |
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| T |
33079018 |
atgttc |
33079013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 41518962 - 41518755
Alignment:
| Q |
10 |
catcatcaggtattaaaattatgcatacatatcttaattccgataaagatatgcatgttcttaatgctagtttacaaacattgaattcaatatgtgtgat |
109 |
Q |
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||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||| ||| ||| ||| |||| ||||||||||||| |||| ||||| |
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| T |
41518962 |
catcatcaggtatataaattatgcttacatttcttaattcctataaagatatgcatggtctgaatactactttaggaacattgaattcattatgggtgat |
41518863 |
T |
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| Q |
110 |
agga-atatgtttggttagat----------agttgaagtaagttattcaatggcatccaaaaggcacagtagaattagcatagttatttaggggaggtt |
198 |
Q |
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| T |
41518862 |
cggataaatgtttggttggatggcagggtctagttgacgtaagttattcattagaaaccaaaaggcatagtagaattagcatagttatttaggggaggtt |
41518763 |
T |
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| Q |
199 |
agtcagag |
206 |
Q |
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|||||||| |
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| T |
41518762 |
agtcagag |
41518755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 27472180 - 27472252
Alignment:
| Q |
328 |
tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatt |
400 |
Q |
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| T |
27472180 |
tgcttttacttgattattacataggaacatagttatcaattggtaccttcttataggaatgtagtcagctatt |
27472252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 22687921 - 22687851
Alignment:
| Q |
330 |
cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatt |
400 |
Q |
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| T |
22687921 |
cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatt |
22687851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 19859478 - 19859531
Alignment:
| Q |
330 |
cttttacttgattattacatagaaacatagttatcaattggtactttcttgtag |
383 |
Q |
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|||||||||||||||| |||||||| |||||||||| ||||||| | ||||||| |
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| T |
19859478 |
cttttacttgattattgcatagaaatatagttatcagttggtacctgcttgtag |
19859531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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