View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13578_high_5 (Length: 281)

Name: NF13578_high_5
Description: NF13578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13578_high_5
NF13578_high_5
[»] chr2 (14 HSPs)
chr2 (65-261)||(31845464-31845662)
chr2 (8-145)||(19945702-19945839)
chr2 (8-163)||(20142961-20143120)
chr2 (8-145)||(13716688-13716825)
chr2 (8-130)||(37714416-37714538)
chr2 (8-133)||(38320190-38320315)
chr2 (8-163)||(3167889-3168047)
chr2 (7-136)||(32976007-32976138)
chr2 (7-113)||(4434289-4434398)
chr2 (26-145)||(27007180-27007299)
chr2 (65-163)||(14131206-14131308)
chr2 (9-130)||(27407416-27407537)
chr2 (8-133)||(35457394-35457518)
chr2 (84-161)||(31264827-31264908)
[»] chr5 (10 HSPs)
chr5 (8-145)||(3040238-3040375)
chr5 (8-145)||(30700848-30700985)
chr5 (8-132)||(25493812-25493936)
chr5 (8-136)||(40519172-40519299)
chr5 (8-145)||(30735299-30735436)
chr5 (7-136)||(20359903-20360034)
chr5 (35-136)||(34280093-34280194)
chr5 (8-133)||(30071764-30071889)
chr5 (7-104)||(35875758-35875855)
chr5 (88-136)||(9666903-9666951)
[»] chr3 (11 HSPs)
chr3 (7-132)||(34905838-34905963)
chr3 (8-136)||(2671896-2672024)
chr3 (29-136)||(31192073-31192180)
chr3 (7-136)||(45852921-45853050)
chr3 (26-145)||(18271941-18272060)
chr3 (26-145)||(26442960-26443079)
chr3 (7-118)||(48897685-48897796)
chr3 (8-161)||(1632802-1632958)
chr3 (26-131)||(1713970-1714075)
chr3 (78-136)||(10593448-10593506)
chr3 (7-57)||(10593526-10593576)
[»] chr1 (15 HSPs)
chr1 (8-163)||(10061585-10061740)
chr1 (7-162)||(29657356-29657515)
chr1 (8-134)||(43537134-43537260)
chr1 (8-121)||(23906608-23906721)
chr1 (8-136)||(26469937-26470065)
chr1 (8-162)||(35413019-35413177)
chr1 (8-121)||(21540067-21540180)
chr1 (8-145)||(35149642-35149779)
chr1 (66-136)||(9113447-9113518)
chr1 (64-137)||(4684517-4684590)
chr1 (8-121)||(11470017-11470130)
chr1 (8-57)||(49313600-49313649)
chr1 (8-163)||(48852636-48852795)
chr1 (29-81)||(47996691-47996743)
chr1 (88-136)||(49313699-49313747)
[»] chr7 (12 HSPs)
chr7 (7-133)||(21882759-21882885)
chr7 (8-161)||(20125583-20125740)
chr7 (7-132)||(8123683-8123808)
chr7 (32-136)||(1985023-1985127)
chr7 (7-136)||(22631472-22631601)
chr7 (8-113)||(46297606-46297711)
chr7 (26-163)||(46413699-46413843)
chr7 (7-143)||(19511402-19511538)
chr7 (7-125)||(23730503-23730619)
chr7 (7-121)||(24250456-24250570)
chr7 (8-136)||(23611737-23611864)
chr7 (8-121)||(44601001-44601106)
[»] chr4 (14 HSPs)
chr4 (8-133)||(24060569-24060694)
chr4 (7-136)||(5288514-5288643)
chr4 (17-136)||(42504181-42504300)
chr4 (7-95)||(25817657-25817745)
chr4 (81-136)||(30220765-30220820)
chr4 (8-106)||(2765385-2765483)
chr4 (26-106)||(29065295-29065375)
chr4 (15-106)||(19482518-19482609)
chr4 (78-136)||(16528629-16528687)
chr4 (12-114)||(41545412-41545514)
chr4 (8-57)||(42108752-42108801)
chr4 (8-104)||(41485730-41485826)
chr4 (8-57)||(13218448-13218497)
chr4 (25-126)||(51304296-51304397)
[»] chr8 (10 HSPs)
chr8 (8-136)||(29414375-29414503)
chr8 (7-115)||(24068125-24068232)
chr8 (7-136)||(5718434-5718571)
chr8 (7-119)||(36947229-36947343)
chr8 (8-145)||(38585066-38585203)
chr8 (35-136)||(5686277-5686378)
chr8 (8-160)||(33543342-33543494)
chr8 (65-159)||(25124420-25124518)
chr8 (29-163)||(43063808-43063946)
chr8 (26-129)||(26415563-26415666)
[»] scaffold0122 (1 HSPs)
scaffold0122 (7-119)||(18626-18738)
[»] chr6 (8 HSPs)
chr6 (7-145)||(28867177-28867315)
chr6 (8-163)||(34713494-34713653)
chr6 (8-160)||(32871711-32871868)
chr6 (8-167)||(6784654-6784817)
chr6 (7-112)||(6519232-6519337)
chr6 (8-136)||(11301829-11301957)
chr6 (65-161)||(3855694-3855793)
chr6 (42-136)||(2130479-2130573)
[»] scaffold0194 (1 HSPs)
scaffold0194 (65-162)||(27066-27167)
[»] scaffold0018 (1 HSPs)
scaffold0018 (8-100)||(69948-70040)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 31845464 - 31845662
Alignment:
Q  65 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgtgtatctatcatttcccttc 164  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31845464 aaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttcttgataaaatttgtgtatctatcatttcccttc 31845563  T
Q  165 ttaatatatgagta-nnnnnnngtcaaaattacactaattcactgtaattttgtc-atattgactataaatctaaacatgcattgaataaaatttgatg 261  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31845564 ttaatatatgagtattttttttgtcaaaattacactaattcactgtaattttgtcaatattgactataaatctaaacatgcattgaataaactttgatg 31845662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 19945839 - 19945702
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||| ||||||| ||||| |||||||||| |||||||||||||||||| ||    |||||||||||||||||||||||||||||||||||||| |||     
T  19945839 ttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaaagatattaa 19945740  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||||||||| |||||||||||||| || |||||    
T  19945739 caaatacactgtcttaaaattttcttgataaattttgt 19945702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 20142961 - 20143120
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||| ||||||  ||||||||||| |||| ||    |||| |||| |||||||| ||||||||||||||||| ||||||    
T  20142961 ttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaaggtgttag 20143060  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccctt 163  Q
     ||||||||| |||  ||||||||||||| || ||||    |||||||||||||||||||    
T  20143061 aaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttccctt 20143120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 13716825 - 13716688
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||| ||||||  ||||||||||||| || ||   ||||| || ||||||||| ||||||||||||| |||| ||||||    
T  13716825 ttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgtgtaattaagaaaaggtgttag 13716726  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||||||| |  ||||||||||||| || |||||    
T  13716725 caaatacactgttttgaaattttcttgataaattttgt 13716688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 37714416 - 37714538
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||  ||| || ||||||| || |||  |||||||||||||||| || |  |||| || |||| ||||||||||||||||||||||| ||||||    
T  37714416 ttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaaggtgttag 37714515  T
Q  108 caaatacactgtctaaaaatttt 130  Q
    ||||||||||| || ||||||||    
T  37714516 caaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 38320315 - 38320190
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || |||||||  | |||  |||||||||||||||| || |  |||| || |||||||||| ||||||| ||||||||  |||||     
T  38320315 ttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaatgtgttat 38320216  T
Q  108 caaatacactgtctaaaaattttctt 133  Q
    |||||||||||||| |||||||||||    
T  38320215 caaatacactgtcttaaaattttctt 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 3167889 - 3168047
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||| |||||||  ||||||||| ||||||  ||||||||||| |||| ||    |||| || | |||||||| ||||||||||| ||||| ||||||    
T  3167889 ttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggtgttag 3167988  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt---gtatctatcatttccctt 163  Q
    |||||| ||| | |||||||||||||||| || |||||    |||||||||||||||||    
T  3167989 caaatatactatttaaaaattttcttgataaattttgtcacttatctatcatttccctt 3168047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 32976138 - 32976007
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggt--aatggtgtgtaattaaggaaagatgt 104  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||| ||    |||| || | ||||  |||||| |||||||||| |||| |||    
T  32976138 attttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaatggtatgtaattaagaaaaggtgt 32976039  T
Q  105 tagcaaatacactgtctaaaaattttcttgat 136  Q
    ||| ||||||||||| |  |||||||||||||    
T  32976038 tagtaaatacactgttttgaaattttcttgat 32976007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 4434289 - 4434398
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaag---ggaggtaatggtgtgtaattaaggaaagatg 103  Q
    ||||||| |||||||||| ||||||| ||| |||||||||||||||||||| |||  ||||| |||   ||||||||||||||||||||||| |||  ||    
T  4434289 attttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgtaattaagtaaatgtg 4434388  T
Q  104 ttagcaaata 113  Q
    || |||||||    
T  4434389 ttggcaaata 4434398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 27007180 - 27007299
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 125  Q
    |||||| |||||||  ||| |||||||||||| ||    |||| |||||||||||| ||||||| |||||||||  ||||| |||||||||||||| |||    
T  27007180 aagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgtcttaaa 27007279  T
Q  126 attttcttgatgaaatttgt 145  Q
    ||||||||||| || |||||    
T  27007280 attttcttgataaattttgt 27007299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 14131206 - 14131308
Alignment:
Q  65 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcc 160  Q
    |||| ||| ||| ||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || || ||||    ||||||||||||||||    
T  14131206 aaatcaagcgagataatggtgtgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttcataaattttgtcactgtatctatcatttcc 14131305  T
Q  161 ctt 163  Q
    |||    
T  14131306 ctt 14131308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 27407416 - 27407537
Alignment:
Q  9 tttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagc 108  Q
    |||||||||||||||| |||||||  | |||| |||||||||||||||| | |   |||| |||| || ||||| ||||||||||||||||  | |||||    
T  27407416 tttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaatgtattagc 27407515  T
Q  109 aaatacactgtctaaaaatttt 130  Q
    ||||||| | ||| ||||||||    
T  27407516 aaatacagtatcttaaaatttt 27407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 35457394 - 35457518
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||| || ||| |||||||||||| |||| |     |||| || |||||||||||||||||||||||||||  |||||     
T  35457394 ttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgtgttaa 35457492  T
Q  108 caaatacactgtctaaaaattttctt 133  Q
    |||||| ||| ||| |||||||||||    
T  35457493 caaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  84 tgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccc 161  Q
    ||||||||||||||||  |||||||||||||||| ||| |||||||  ||||| || ||||    |||||||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 3040375 - 3040238
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||| ||||||    
T  3040375 ttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaaggtgttag 3040276  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||||||||| |||||||||||||| || |||||    
T  3040275 caaatacactgtcttaaaattttcttgataaattttgt 3040238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 30700985 - 30700848
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||| |||  ||||||||||||||||| ||||||||||||||||| ||   ||||||||||||||||||| |||||||||||| |||| ||||||    
T  30700985 ttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaattaagaaaaggtgttag 30700886  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||||||||| |||||||| ||||| || |||||    
T  30700885 caaatacactgtcttaaaatttttttgataaattttgt 30700848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 25493812 - 25493936
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||| | ||  | |||| || |||||||||||||||||||||||||||  | |||     
T  25493812 ttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaaggaaatgtattaa 25493911  T
Q  108 caaatacactgtctaaaaattttct 132  Q
    |||||| |||||||  |||||||||    
T  25493912 caaatatactgtcttgaaattttct 25493936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 40519172 - 40519299
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| |||||||| | ||||||  |||||||||||||||| || |  |||| | ||||||||||| |||||||||||| ||| || || |    
T  40519172 ttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatca-gggaggtaatgatgtgtaattaagaaaaaatattgg 40519270  T
Q  108 caaatacactgtctaaaaattttcttgat 136  Q
    |||||||||||||| ||||||||||||||    
T  40519271 caaatacactgtcttaaaattttcttgat 40519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 30735436 - 30735299
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||| ||||||  || |||||||||||||| ||||||||||||||||| ||    |||| ||||||||||||| || ||||||||| |||  ||||||    
T  30735436 ttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatgctgggtaattaagaaaaagtgttag 30735337  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||||||| |  ||||||||||||| || |||||    
T  30735336 caaatacactgttttgaaattttcttgataaattttgt 30735299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 20359903 - 20360034
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgtt--atatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgt 104  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| ||||  || | |   |||| || |||| ||||||||||||||||| ||||| |||    
T  20359903 attttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaaaggtgt 20360002  T
Q  105 tagcaaatacactgtctaaaaattttcttgat 136  Q
    ||||||||| || ||||  ||| |||||||||    
T  20360003 tagcaaatataccgtcttgaaactttcttgat 20360034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 34280194 - 34280093
Alignment:
Q  35 tctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttg 134  Q
    ||||| ||||||||||||||||| ||    ||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| || ||||| || |||    
T  34280194 tctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaaatattattg 34280095  T
Q  135 at 136  Q
    ||    
T  34280094 at 34280093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 30071764 - 30071889
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||| |||||| |  ||||||| ||||||  ||||||||||| |||| || |  |||| | || ||||| |||||||||||| |||||||  |||||    
T  30071764 ttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagtggtgtgtaattgaggaaaggagttag 30071863  T
Q  108 caaatacactgtctaaaaattttctt 133  Q
    |||||||| ||||| |||||||||||    
T  30071864 caaatacattgtcttaaaattttctt 30071889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 35875855 - 35875758
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgt 104  Q
    |||||||||||||||||| ||| ||| || | || |||||||||||  | |  ||  ||||||||||||| |||||  ||||||||||||||||||||    
T  35875855 attttatcaagaattgatcaaggaaaggtttaagccaattaaatttcatgttggccgaaaattaagggagataatgaggtgtaattaaggaaagatgt 35875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 9666951 - 9666903
Alignment:
Q  88 taattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    |||||| |||||| |||||||||||||||  ||| ||||||||||||||    
T  9666951 taattatggaaaggtgttagcaaatacaccatcttaaaattttcttgat 9666903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 34905838 - 34905963
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| ||  |||||| || |||||||||| ||| ||||||||||||| |||||    
T  34905838 attttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaaggaaaggtgtta 34905937  T
Q  107 gcaaatacactgtctaaaaattttct 132  Q
    ||||||||||||||| ||||||||||    
T  34905938 gcaaatacactgtcttaaaattttct 34905963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 2671896 - 2672024
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||||| ||||||| || |||| ||||||||||||||||  ||| ||||| |  |||| ||||| |||||||||||||||||||||||     
T  2671896 ttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgttaa 2671995  T
Q  108 caaatacactgtctaaaaattttcttgat 136  Q
    |||||||||||||| ||||||||||||||    
T  2671996 caaatacactgtcttaaaattttcttgat 2672024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 31192073 - 31192180
Alignment:
Q  29 aaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaatt 128  Q
    ||||| ||||| ||||||||||||||||| |  | ||||||||| ||| |||| |||||||||||||||||||| ||||||||||| |||||| ||||||    
T  31192073 aaaatatctcaatcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaatt 31192172  T
Q  129 ttcttgat 136  Q
    ||||||||    
T  31192173 ttcttgat 31192180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 45853050 - 45852921
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||||||||||| || ||||||| ||||||  ||||||||||| |||| ||||   ||| ||||||| ||||| | |||||||||| |||| |||||    
T  45853050 attttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatgatatgtaattaagaaaaggtgtta 45852951  T
Q  107 gcaaatacactgtctaaaaattttcttgat 136  Q
    |||||||||| |||| ||||||||||||||    
T  45852950 gcaaatacacggtcttaaaattttcttgat 45852921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 18272060 - 18271941
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 125  Q
    |||||||| |||||  |||||||||||||||| ||    |||| || |||||||||||||||||||||| ||||| ||||||||||||| || ||| |||    
T  18272060 aagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctatcttaaa 18271961  T
Q  126 attttcttgatgaaatttgt 145  Q
    ||||||||||| || |||||    
T  18271960 attttcttgataaattttgt 18271941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 26442960 - 26443079
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 125  Q
    ||||||| ||||||  |||||||||||||||| ||    |||| |||||||||||||||||||||||||  |||| ||||| ||||||||||||||  ||    
T  26442960 aagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgtcttgaa 26443059  T
Q  126 attttcttgatgaaatttgt 145  Q
    ||||||||||| || |||||    
T  26443060 attttcttgataaattttgt 26443079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 48897796 - 48897685
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||||||||||| || || ||||||| ||||  | ||||||||||||| ||   ||||| || |||  |||||||||||||||||| ||||||||||    
T  48897796 attttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatggtgtgtaattaagaaaagatgtta 48897697  T
Q  107 gcaaatacactg 118  Q
    ||||||| ||||    
T  48897696 gcaaatagactg 48897685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 1632802 - 1632958
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||| |||| || ||||||||||||||   ||||||||||||||| |     |||| || |||||||||||||||||||||| ||||  |||||     
T  1632802 ttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaacgtgttaa 1632900  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccc 161  Q
    ||||||||||||||   |||||| ||||| || ||||    |||||||||||||||||    
T  1632901 caaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttccc 1632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 1714075 - 1713970
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 125  Q
    |||||||| | ||| ||||||||||||||||| ||    |||||||||||| |||| |||| |||||||| ||| ||||||  |||||||||||||  ||    
T  1714075 aagaaaatatttcaatcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtcttgaa 1713976  T
Q  126 attttc 131  Q
    ||||||    
T  1713975 attttc 1713970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 10593506 - 10593448
Alignment:
Q  78 taatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    ||||||||| |||||| | |||| ||||| |||||||||| ||| ||||||||||||||    
T  10593506 taatggtgtataattaggaaaaggtgttaacaaatacactatcttaaaattttcttgat 10593448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 10593576 - 10593526
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 57  Q
    ||||||||||||||| ||  |||||||||||||  ||||||||||||||||    
T  10593576 attttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttat 10593526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 10061585 - 10061740
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || || |||| ||||||  |||||||||||||||| ||  | |||| ||||||||||||| ||||||||||||||||  ||||||    
T  10061585 ttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttag 10061684  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgtgtatctatcatttccctt 163  Q
    |||||| |||||||  ||||||||||||| || ||||| |||||||||||||||||    
T  10061685 caaataaactgtcttgaaattttcttgataaattttgtctatctatcatttccctt 10061740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 29657356 - 29657515
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||| ||||| | ||||||| ||||||  |||||||||||||||| |||  ||||| || |||||||||| | ||||||||||||||| |||||    
T  29657356 attttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaaggtgtta 29657455  T
Q  107 gcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccct 162  Q
    |||||||||||||||  ||||||||||||| |||||||    ||||||||||||||||||    
T  29657456 gcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttccct 29657515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 43537260 - 43537134
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||| ||||||| |||||||||||||||| |||   |||| ||||||||||||||||||||||||| ||||  |||||     
T  43537260 ttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaatgtgttaa 43537161  T
Q  108 caaatacactgtctaaaaattttcttg 134  Q
    ||||||||||||||  |||||||||||    
T  43537160 caaatacactgtcttgaaattttcttg 43537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 23906721 - 23906608
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||||| ||||||| || |||| |||||||||||||||| ||| | |||| ||| ||||||||||||||||||||| ||||| ||||||    
T  23906721 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgtgtaattaaagaaaggtgttag 23906622  T
Q  108 caaatacactgtct 121  Q
    |||||||| |||||    
T  23906621 caaatacattgtct 23906608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 26469937 - 26470065
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||||||||||   |||||||||| |||| |  | ||||| || | || ||||||||||||||||||||||| ||||||    
T  26469937 ttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaaggtgttag 26470036  T
Q  108 caaatacactgtctaaaaattttcttgat 136  Q
    |||||||||||| | ||||||||||||||    
T  26470037 caaatacactgttttaaaattttcttgat 26470065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 35413019 - 35413177
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||| |||| || ||||||| ||||||  |||||||||||||||| ||    |||| |||||||||||| |||||||||||||||||| |||||     
T  35413019 ttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaaggtgttaa 35413118  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgtg----tatctatcatttccct 162  Q
    |||||||||| |||  ||||||||||||| || |||||     ||||||||||||||||    
T  35413119 caaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttccct 35413177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 21540067 - 21540180
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||| | || ||||||||||||||| |||||||||||||||| ||    |||||||||||| |||||  |||||||||| ||||| |||||     
T  21540067 ttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagtgtaattaaagaaaggtgttaa 21540166  T
Q  108 caaatacactgtct 121  Q
    ||||||||||||||    
T  21540167 caaatacactgtct 21540180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 35149779 - 35149642
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || |||||||| ||| |  |||||||||||||||| ||  | |||| ||||||| ||||| ||| ||||||||||||| ||||||    
T  35149779 ttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaaggaaaggtgttag 35149680  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||| | |||  ||||||| ||||| || |||||    
T  35149679 caaatacattctcttgaaatttttttgataaattttgt 35149642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 9113518 - 9113447
Alignment:
Q  66 aattaagggaggtaatggtgtgtaattaaggaaagatgttagc-aaatacactgtctaaaaattttcttgat 136  Q
    ||||||||||||||||| | ||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||    
T  9113518 aattaagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttcttgat 9113447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 4684517 - 4684590
Alignment:
Q  64 aaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatg 137  Q
    ||||| || |||| ||||||||||||||||||||||| ||||||||||||   ||| | |||||||||||||||    
T  4684517 aaaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaatatgttgtttgaaaattttcttgatg 4684590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 11470017 - 11470130
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||| ||||||| || |||||||| ||| |  |||||||||||||||| ||    |||| ||||||||||||| |||||||||||| ||| ||||||     
T  11470017 ttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaatatgttaa 11470116  T
Q  108 caaatacactgtct 121  Q
     ||||||| |||||    
T  11470117 gaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 49313600 - 49313649
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 57  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  49313600 ttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttat 49313649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 48852636 - 48852795
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||| ||||||| || || ||||||| | | ||||||||||||||||| |   |||||| || | || ||||| ||| |||||||| ||| ||||||     
T  48852636 ttttattaagaatttatcaaaaaaatgttttaatcaattaaatttgttatttagaaaaaatcaaagaagataatgatgtataattaagaaaaaatgttaa 48852735  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccctt 163  Q
    |||||||| ||| | |||| ||| ||||| || ||||    || ||||||||||||||||    
T  48852736 caaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccctt 48852795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 47996691 - 47996743
Alignment:
Q  29 aaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaat 81  Q
    ||||||| |||||||||||||||| ||||  |||  |||||||||||||||||    
T  47996691 aaaatgtttcagtcaattaaatttcttattggctggaaattaagggaggtaat 47996743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 49313699 - 49313747
Alignment:
Q  88 taattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    ||||||||||||||  ||||||||||||| ||| ||||| |||||||||    
T  49313699 taattaaggaaagaaattagcaaatacaccgtcaaaaaaatttcttgat 49313747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 21882885 - 21882759
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||| ||||||||||||||||||  |||||| |||||||||||||||| |||   |||| ||||||||||||||||||||||||||||||  |||||    
T  21882885 attttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgtta 21882786  T
Q  107 gcaaatacactgtctaaaaattttctt 133  Q
    |||||||||||||||  ||||||||||    
T  21882785 gcaaatacactgtcttgaaattttctt 21882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 20125583 - 20125740
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||  ||  | ||||||| | || ||||||||||||||||| ||||| | ||||    
T  20125583 ttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaattaaagaaaggtattag 20125682  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccc 161  Q
    ||||||||||||||  ||||||||||||| |||||||    |||||||||||||||||    
T  20125683 caaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttccc 20125740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 8123683 - 8123808
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||| || |  ||||||| |||| ||||  ||| ||||||| ||||| |||||    
T  8123683 attttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataataatgtataattaaagaaaggtgtta 8123782  T
Q  107 gcaaatacactgtctaaaaattttct 132  Q
    ||||||| || |||  ||||||||||    
T  8123783 gcaaatataccgtcctaaaattttct 8123808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 1985023 - 1985127
Alignment:
Q  32 atgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttc 131  Q
    ||||||||| |||||||||||||||| |||   |||| |||| |||||||||| ||||||||||||||  |||||||||||||||| ||| |||||||||    
T  1985023 atgtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaaattttc 1985122  T
Q  132 ttgat 136  Q
    |||||    
T  1985123 ttgat 1985127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 22631472 - 22631601
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||| |||||||||| |||||||  |||||| |||||||||||||||| ||    |||| || |||| |||| |||||||||||||||||| |||||    
T  22631472 attttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgtta 22631571  T
Q  107 gcaaatacactgtctaaaaattttcttgat 136  Q
    || ||||||| ||||  |||||||||||||    
T  22631572 gctaatacaccgtcttgaaattttcttgat 22631601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 46297606 - 46297711
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||||||||||| || || |||||||||| ||   ||||| ||||||| ||||||||||||||||||||||  ||||||    
T  46297606 ttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaattaaggaaatgtgttag 46297705  T
Q  108 caaata 113  Q
    ||||||    
T  46297706 caaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 46413843 - 46413699
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaa---aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtcta 122  Q
    ||||||||||||||  |||||||||||||||| || |     |||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||     
T  46413843 aagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtctt 46413744  T
Q  123 aaaattttcttgatgaaatttg----tgtatctatcatttccctt 163  Q
     ||||||| || || || ||||    |||||||||||||||||||    
T  46413743 gaaatttttttaataaattttgtcaatgtatctatcatttccctt 46413699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 19511402 - 19511538
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||||||||||||||||||| || | || ||||||||||| |||| |  |  |||| || |||| |||| ||| |||||||||||||| |||||    
T  19511402 attttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaattaaggaaaggtgtta 19511501  T
Q  107 gcaaatacactgtctaaaaattttcttgatgaaattt 143  Q
      |||||||||||||  ||||||| ||||| ||||||    
T  19511502 ataaatacactgtctcgaaatttttttgataaaattt 19511538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 23730619 - 23730503
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||||||||||| ||||||| || ||||  ||||||||| ||||| ||    |||| ||| |||||||||||||  |||||||||||| |||||    
T  23730619 attttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatggtgt--aattaaggaaaggtgtta 23730522  T
Q  107 gcaaatacactgtctaaaa 125  Q
     ||||||||||||||||||    
T  23730521 acaaatacactgtctaaaa 23730503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 24250570 - 24250456
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||||||||||| |||||||  ||| |  ||||| |||||||||| ||    |||| ||||||||||||||| |||||||||| |||||| |||    
T  24250570 attttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaattaagaaaagatatta 24250471  T
Q  107 gcaaatacactgtct 121  Q
    | |||||| ||||||    
T  24250470 gtaaatacgctgtct 24250456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 23611864 - 23611737
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||| ||||||| || ||||||||||||||   ||||||||||||||| ||    |||| ||| ||||||||||  |||||||||| |||| |||||     
T  23611864 ttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatgga-tgtaattaagtaaaggtgttaa 23611766  T
Q  108 caaatacactgtctaaaaattttcttgat 136  Q
    |||||||||||| |  |||||||||||||    
T  23611765 caaatacactgttttgaaattttcttgat 23611737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 44601001 - 44601106
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||   ||||||||||| ||| ||||||||||||||||| ||  |        ||||| ||||| |||||||||||| |||  ||||||    
T  44601001 ttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttggca--------gggagataatgatgtgtaattaagaaaatgtgttag 44601092  T
Q  108 caaatacactgtct 121  Q
    ||||||||||||||    
T  44601093 caaatacactgtct 44601106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 24060569 - 24060694
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||||| |||||||||||| ||  |||||||||||||||  | || |||| ||||||| ||||||||||||||||||||||  ||||||    
T  24060569 ttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaatgtgttag 24060668  T
Q  108 caaatacactgtctaaaaattttctt 133  Q
    |||||||||||| | |||||||||||    
T  24060669 caaatacactgttttaaaattttctt 24060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 5288514 - 5288643
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||   |||| ||||||| |||||||||||||||||  |||  |||||    
T  5288514 attttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaatgtgtta 5288613  T
Q  107 gcaaatacactgtctaaaaattttcttgat 136  Q
    ||||||| || ||||  ||| |||||||||    
T  5288614 gcaaatataccgtcttgaaactttcttgat 5288643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 42504300 - 42504181
Alignment:
Q  17 gaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacac 116  Q
    |||||||| |||||||  | |||  |||||||||||||||| |||   |||| ||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  42504300 gaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacac 42504201  T
Q  117 tgtctaaaaattttcttgat 136  Q
    ||||| ||||||||||||||    
T  42504200 tgtcttaaaattttcttgat 42504181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 25817657 - 25817745
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaag 95  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||    |||| ||| ||||||||||||||||||||||    
T  25817657 attttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaag 25817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 30220765 - 30220820
Alignment:
Q  81 tggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  30220765 tggtgtgtaattaaggaaaagtgttagcaaatacactgtcttaaaattttcttgat 30220820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 2765483 - 2765385
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||| |||| ||||| ||||||| |||| || ||||||||||||||||  || |||||| | ||||| ||||| ||||||||||| ||||| |||||    
T  2765483 ttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaaggtgtta 2765385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 29065375 - 29065295
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||| |||||| ||||||||||||||||| ||    |||| || |||||||||||||||||||||| ||||| |||||    
T  29065375 aagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgtta 29065295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 19482518 - 19482609
Alignment:
Q  15 aagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||| || |||||||| | |||  |||||||||||||||| ||    |||| |||||| |||||||||||||||||||||||| |||||    
T  19482518 aagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaaggtgtta 19482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 16528629 - 16528687
Alignment:
Q  78 taatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    ||||||||||||||||| ||||  ||||| |||||||||| ||| ||||||||||||||    
T  16528629 taatggtgtgtaattaaagaaatgtgttaacaaatacactatcttaaaattttcttgat 16528687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41545412 - 41545514
Alignment:
Q  12 atcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaa 111  Q
    |||||||||| || ||||||| | ||||  |||||||||||||||| ||  | ||||  | | ||||||| |||||||||||| ||||| ||||||||||    
T  41545412 atcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaattgtgtgtaattaatgaaaggtgttagcaaa 41545511  T
Q  112 tac 114  Q
    |||    
T  41545512 tac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 42108801 - 42108752
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 57  Q
    ||||||||||||||||| ||||||| || |||| ||||||||||||||||    
T  42108801 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttat 42108752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 41485730 - 41485826
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgt 104  Q
    ||||||||||||||||| ||||||| || | || |||||||||||  |    ||   ||||||||||||||||||| ||||||||||| ||||||||    
T  41485730 ttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggaggtaatggggtgtaattaagaaaagatgt 41485826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 13218448 - 13218497
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 57  Q
    |||||| || |||| |||||||||| ||||| ||||||||||||||||||    
T  13218448 ttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttat 13218497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 51304397 - 51304296
Alignment:
Q  25 taagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaa 124  Q
    ||||||||| || || ||||||||||||||||| ||    |||| || |||| |||||| ||| ||||||  ||| ||||||||||||||| ||||| ||    
T  51304397 taagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgcaattaaaaaaatatgttagcaaatacattgtcttaa 51304298  T
Q  125 aa 126  Q
    ||    
T  51304297 aa 51304296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 29414375 - 29414503
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||  ||||| |||| |||||||||||| ||||||||||||| |||||     
T  29414375 ttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaattaaggaaaggtgttaa 29414474  T
Q  108 caaatacactgtctaaaaattttcttgat 136  Q
    ||||| |||||| |  |||||||||||||    
T  29414475 caaatgcactgttttgaaattttcttgat 29414503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 24068232 - 24068125
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||||||||||||||  |||||| ||||||| |||||||||||||||| ||| |||| | || |||||| |||||||||||||||||||||||||||    
T  24068232 attttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgccaaaa-tcaaaggaggtgatggtgtgtaattaaggaaagatgtta 24068134  T
Q  107 gcaaataca 115  Q
    | |||||||    
T  24068133 ggaaataca 24068125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 5718571 - 5718434
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcag--------tcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaa 98  Q
    |||||||||||||||||| ||||||| |||||||        |||||||||||| |||| ||    |||| |||| ||||||||||||||||||||||||    
T  5718571 attttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaa 5718472  T
Q  99 agatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    |  |||||||||||||||||||| ||||||||||||||    
T  5718471 atgtgttagcaaatacactgtcttaaaattttcttgat 5718434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 36947343 - 36947229
Alignment:
Q  7 attttatcaagaattgattaagaaaa--tgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgt 104  Q
    |||||||||||||||||| || ||||  ||| ||| |||||||||||||||||  || |||||| ||||||||||||| ||| ||||||| ||||  |||    
T  36947343 attttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggtaatgatgtataattaaagaaatgtgt 36947244  T
Q  105 tagcaaatacactgt 119  Q
    ||  |||||||||||    
T  36947243 taataaatacactgt 36947229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 38585203 - 38585066
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || |||||||||| ||| | |||||||||||| || ||    |||| || ||||||||| |||||||||||| ||||  ||||||    
T  38585203 ttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaaagtgttag 38585104  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    |||||||| ||  |  ||||||||||||| || |||||    
T  38585103 caaatacattgctttgaaattttcttgataaattttgt 38585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 5686378 - 5686277
Alignment:
Q  35 tctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttg 134  Q
    ||||| ||||||||||||||||| |||   |||| ||||||||||||  | ||||||||| ||||  ||||||||||||| || |||  |||||||||||    
T  5686378 tctcaatcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttcttg 5686279  T
Q  135 at 136  Q
    ||    
T  5686278 at 5686277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 33543342 - 33543494
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||| |||| || || |||||||||||  |||| ||||||||||| ||    |||| ||||||| ||||| |||||||||||  |||| |||||     
T  33543342 ttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggagataatg-tgtgtaattaaaaaaaggtgttaa 33543439  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttgt--gtatctatcatttcc 160  Q
    |||||| |||||||  | ||||||||||| || |||||  |||||||||||||||    
T  33543440 caaatatactgtcttgatattttcttgataaattttgtcagtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 25124420 - 25124518
Alignment:
Q  65 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttc 159  Q
    |||| ||| ||| ||||| |||||||||||| |||| | ||| ||||||||||||||  ||||||||||||| || ||||    |||||||||||||||    
T  25124420 aaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 43063946 - 43063808
Alignment:
Q  29 aaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaatt 128  Q
    |||| ||||||||||||||||||| |||| || | ||||| ||   |||||||| ||| |||||||  |||||| ||| |||||||| | ||| ||||||    
T  43063946 aaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaaaaaaagatattaacaaatacattatctcaaaatt 43063847  T
Q  129 ttcttgatgaaatttg----tgtatctatcatttccctt 163  Q
    ||||| ||  | ||||    |||||||||||||||||||    
T  43063846 ttcttaatacattttgtcgatgtatctatcatttccctt 43063808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 26415563 - 26415666
Alignment:
Q  26 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 125  Q
    ||||||| ||||||  ||||||||||| |||| ||    |||||||  ||| ||||| ||||||||||||||||| | |||||||||| ||| ||| |||    
T  26415563 aagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactatcttaaa 26415662  T
Q  126 attt 129  Q
    ||||    
T  26415663 attt 26415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 18626 - 18738
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    ||||||| |||||||||| ||||||| |||| ||||||||||||||||||| ||   ||||||||||||| |||||||| |||||||||||||  |||||    
T  18626 attttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatggtgagtaattaaggaaatgtgtta 18725  T
Q  107 gcaaatacactgt 119  Q
    |||||||||||||    
T  18726 gcaaatacactgt 18738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 28867177 - 28867315
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||||||||||||||||||| || ||| ||||||||||||||||| || |  |||| || ||||||||| || ||||||||||||||  | |||    
T  28867177 attttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaatgtttta 28867276  T
Q  107 gcaaatacactgtctaaaaattttcttgatgaaatttgt 145  Q
    ||||||||| |||||  |||||||||||||  |||||||    
T  28867277 gcaaatacattgtcttgaaattttcttgatacaatttgt 28867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 34713494 - 34713653
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || |||||| |||||||   ||||||||||||||| ||   ||||| |||||| ||||||||||||| ||||| |||| |||||     
T  34713494 ttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaaggtgttaa 34713593  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccctt 163  Q
    |||||||||| ||| |||||||||||||| || ||||    |||||||||||||||||||    
T  34713594 caaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttccctt 34713653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 32871868 - 32871711
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    |||||||||||||| || ||||||| || |||  |||||||||||||||| ||    |||| |||||||||||| ||||||||||||||||| |||||||    
T  32871868 ttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaaaatgttag 32871769  T
Q  108 caaatacactgtc-taaaaattttcttgatgaaatttg----tgtatctatcatttcc 160  Q
     |||||||||||| || ||||||||||||| || ||||    ||||||||||||||||    
T  32871768 taaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 6784817 - 6784654
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||| |||| || || ||||  |||||| |||||||||||||||| ||    |||| ||||||| |||||||||||||||||| |||| ||||||    
T  6784817 ttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaaggtgttag 6784718  T
Q  108 caaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcccttctta 167  Q
    |||||||||| |||  |||||||||||||| | ||||    | ||||||||||||||| |||||    
T  6784717 caaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttcccatctta 6784654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 6519232 - 6519337
Alignment:
Q  7 attttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 106  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||  ||||| || ||| |||||| |||||||||||| |||   ||||    
T  6519232 attttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagtta 6519331  T
Q  107 gcaaat 112  Q
    ||||||    
T  6519332 gcaaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 11301829 - 11301957
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 107  Q
    ||||||||||||||||| | ||||| ||||||||||||| |||||||||| |    ||||| |||  ||||||| || | ||||||||||||||||||||    
T  11301829 ttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaatagtatataattaaggaaagatgttag 11301928  T
Q  108 caaatacactgtctaaaaattttcttgat 136  Q
     ||||||||| | | ||||||||||||||    
T  11301929 gaaatacactattttaaaattttcttgat 11301957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 3855793 - 3855694
Alignment:
Q  65 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcc 160  Q
    ||||||||||| |||||  ||||||||||||||||| ||||||| ||||||||||||  ||||||||||||| || ||||    ||||||||||||||||    
T  3855793 aaattaagggatgtaataatgtgtaattaaggaaaggtgttagc-aatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 3855695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 2130573 - 2130479
Alignment:
Q  42 caattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 136  Q
    |||||||||||||||| ||    |||| || |||||| || |||||||||||||||||| ||||||||||||||| || |  |||||||||||||    
T  2130573 caattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaaggtgttagcaaatacaccgttttgaaattttcttgat 2130479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 27167 - 27066
Alignment:
Q  65 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcc 160  Q
    |||| ||||||| |||| | |||||||||||||||| ||||| ||||||||||||||  ||||||||||||| || ||||    ||||||||||||||||    
T  27167 aaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 27068  T
Q  161 ct 162  Q
    ||    
T  27067 ct 27066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 70040 - 69948
Alignment:
Q  8 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaag 100  Q
    ||||||| | ||||||| ||||||| || |||| ||||||||||||||||  ||   |||| ||||||| |||||| ||||||||||||||||    
T  70040 ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaag 69948  T

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