View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13578_low_1 (Length: 737)
Name: NF13578_low_1
Description: NF13578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13578_low_1 |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 1 - 731
Target Start/End: Complemental strand, 24494217 - 24493487
Alignment:
| Q |
1 |
accaaagtgtagagtttgacatcgcctttgagagagatgaacaatgagtgatcagatttggaatggacaaacccataggagagtaagaaagaatgtaagg |
100 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24494217 |
accaaagtgtagagtttgacatcacctttgagatagatgaataatgatggatcagatttggaattgacaaacccataggagagtaagaaagaatgtaagg |
24494118 |
T |
|
| Q |
101 |
tgttaaaccatgcccgaggggcctgttttaggccatacaaagatttctttagccgacaaacatgattagggtaatctggatgatgaaatcccggtggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494117 |
tgttaaaccatgcccgaggggcctgttttaggccatacaaagatttctttagccgacaaacatgattagggtaatctggatgatgaaatcccggtggttg |
24494018 |
T |
|
| Q |
201 |
ttgcatgtatacagtttctgaaagcttaccatgcaagaacgcattgtttacatccaactggtgaatgtgccagcgttgttgaatggccaatgtaagaacc |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494017 |
ttgcatgtatacaatttctgaaagcttaccatgcaagaacgcattgtttacatccaactggtgaatgtgccagcgttgttgaatggccaatgtaagaacc |
24493918 |
T |
|
| Q |
301 |
aaccgaactgttgaaggcttaatcacaggactgaatgtttgatcataatctagtccaggacgttgatgaaatcctttcgcgactagacgtgccttgtatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493917 |
aaccgaactgttgaaggcttaatcacaggactgaatgtttgatcataatctagtccaggacgttgatgaaatcctttcgcgactagacgtgccttgtatc |
24493818 |
T |
|
| Q |
401 |
tatcaatggagccgtctggccgacgtttcacccgaaacacccacttacatccaatgagcttagacgctgtgtttttcggaactcgatcccaagtcccctg |
500 |
Q |
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| T |
24493817 |
tatcaatggagccgtctggccgacgtttcacccgaaacacccacttacatccaatgagattagacgctgtgtttttaggaactagatcccaagtcccctg |
24493718 |
T |
|
| Q |
501 |
ttgcatcaatgcattaaattctgatgccatgtcggcacgccattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaagga |
600 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493717 |
ttgcatcaatgcattaaattctgatgccatggcggcacaccattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaagga |
24493618 |
T |
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| Q |
601 |
tgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgct |
700 |
Q |
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| T |
24493617 |
tgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgct |
24493518 |
T |
|
| Q |
701 |
ccaatggtggtgtggtttgtgatgatgatgt |
731 |
Q |
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| T |
24493517 |
ccaatggtggtgtggtttgtgatgaggatgt |
24493487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Complemental strand, 93567 - 92975
Alignment:
| Q |
1 |
accaaagtgtagagtttgacatcgcctttgagagagatgaacaatgagtgatcagatttggaatggacaaacccataggagagtaagaaagaatgtaagg |
100 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
93567 |
accaaagtgtagagtttgacatcacctttgagatagatgaataatgatggatcagattttgaattgacaaatccataggagagtaagaaagaatgtaagg |
93468 |
T |
|
| Q |
101 |
tgttaaaccatgcccgaggggcctgttttaggccatacaaagatttctttagccgacaaacatgattagggtaatctggatgatgaaatcccggtggttg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
93467 |
tgttgaaccatgcccgaggggcctgttttaggccatacaaagatttctttagccgacaaacatgattagggtaatctagatgatgaaatcctggtggttg |
93368 |
T |
|
| Q |
201 |
ttgcatgtatacagtttctgaaagcttaccatgcaagaacgcattgtttacatccaactggtgaatgtgccagcgttgttgaatggccaatgtaagaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93367 |
ttgcatgtatacagtttctgaaagcttaccatgcaagaacacattgtttacatccaactggtgaatgtgccagcgttgttgaatggccaatgtaagaacc |
93268 |
T |
|
| Q |
301 |
aaccgaactgttgaaggcttaatcacaggactgaatgtttgatcataatctagtccaggacgttgatgaaatcctttcgcgactagacgtgccttgtatc |
400 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
93267 |
aaccgaactgttgaaggcttaatcgcaggactgaatgtttgatcataatctagtccatgacattgatgaaatcctttcgcgactagacgtgccttgtatc |
93168 |
T |
|
| Q |
401 |
tatcaatggagccgtctggccgacgtttcacccgaaacacccacttacatccaatgagcttagacgctgtgtttttcggaactcgatcccaagtcccctg |
500 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |
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| T |
93167 |
tgtcaatggagccgtctggccgacgtttcacccgaaacacccacttacatccaatgagattagacgctgtgttttttggaactagatcccaagtcccctg |
93068 |
T |
|
| Q |
501 |
ttgcatcaatgcattaaattctgatgccatgtcggcacgccattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg |
593 |
Q |
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| T |
93067 |
ttgcatcaatgcattaaattctgatgccatggcggcactccattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg |
92975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 632 - 731
Target Start/End: Complemental strand, 92951 - 92852
Alignment:
| Q |
632 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgatgatgt |
731 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 565
Target Start/End: Complemental strand, 92976 - 92945
Alignment:
| Q |
534 |
ggcacgccattcagaagaagccattgcttgtg |
565 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92976 |
ggcacgccattcagaagaagccattgcttgtg |
92945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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